From 49e2f3345a0b0826e26247c8d59dfeee0a0be797 Mon Sep 17 00:00:00 2001 From: Niamh Date: Mon, 10 Aug 2026 10:36:54 +0100 Subject: [PATCH 1/2] adding a header to the samples database file - compatible with svd import update --- modules/database/create_samples_database.nf | 1 + 1 file changed, 1 insertion(+) diff --git a/modules/database/create_samples_database.nf b/modules/database/create_samples_database.nf index 4b1a2e3..6cac3a5 100644 --- a/modules/database/create_samples_database.nf +++ b/modules/database/create_samples_database.nf @@ -12,6 +12,7 @@ process MERGE_SAMPLES_DATABASE { script: """ + echo "sample,worksheet,assay,referral,run,genome_build,sample_reads,ntc_reads" > samples_database_${worksheet}_RNA.csv cat > samples_database_${worksheet}_RNA.csv """ } From 6fd65b2e32928a99f61c798ecaee77dc3982b2b6 Mon Sep 17 00:00:00 2001 From: Niamh Date: Mon, 10 Aug 2026 10:37:59 +0100 Subject: [PATCH 2/2] appending instead --- modules/database/create_samples_database.nf | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/modules/database/create_samples_database.nf b/modules/database/create_samples_database.nf index 6cac3a5..a0aa804 100644 --- a/modules/database/create_samples_database.nf +++ b/modules/database/create_samples_database.nf @@ -13,7 +13,7 @@ process MERGE_SAMPLES_DATABASE { script: """ echo "sample,worksheet,assay,referral,run,genome_build,sample_reads,ntc_reads" > samples_database_${worksheet}_RNA.csv - cat > samples_database_${worksheet}_RNA.csv + cat >> samples_database_${worksheet}_RNA.csv """ }