Hi!
I followed the spring_example_pmbc_4k example as well as the cell labeling with SignacX using my own data, and was able to generate a SPRING plot that looks like what I would have expected based on other clustering packages. However, when I try to look at expression by gene, nothing shows up despite the expression scalebar changing depending on what gene is entered. Similarly, I do not get a list of enriched genes when I select a group of cells from the cell labels. For instance, this is the output for two genes in my dataset showing the different scale bars:
and this is the empty gene list for a group of selected cells:
Do you have any suggestions as to what to do from here?
Hi!
I followed the spring_example_pmbc_4k example as well as the cell labeling with SignacX using my own data, and was able to generate a SPRING plot that looks like what I would have expected based on other clustering packages. However, when I try to look at expression by gene, nothing shows up despite the expression scalebar changing depending on what gene is entered. Similarly, I do not get a list of enriched genes when I select a group of cells from the cell labels. For instance, this is the output for two genes in my dataset showing the different scale bars:
and this is the empty gene list for a group of selected cells:
Do you have any suggestions as to what to do from here?