Update interaction analysis notebook formatting

Author: amorehead

notebooks/dataset_interaction_analysis_plotting.ipynb

@@ -195,12 +195,10 @@
     "    # cd ../../notebooks/\n",
     "    # NOTE: Now, you should have a PDBBind data directory structure that looks like this: `../data/pdbbind/PDBBind_processed/`\n",
     "\n",
-    "    pdbbind_train_ids = set(\n",
-    "        pd.read_csv(\n",
-    "            os.path.join(os.path.dirname(pdbbind_set_dir), \"timesplit_no_lig_overlap_train\"),\n",
-    "            header=None,\n",
-    "        ).values.tolist()\n",
-    "    )\n",
+    "    with open(\n",
+    "        os.path.join(os.path.dirname(pdbbind_set_dir), \"timesplit_no_lig_overlap_train\")\n",
+    "    ) as f:\n",
+    "        pdbbind_train_ids = set(f.read().splitlines())\n",
     "\n",
     "    pdbbind_train_set_dirs = [\n",
     "        item for item in os.listdir(pdbbind_set_dir) if item in pdbbind_train_ids\n",