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amoreheadamorehead
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Simplify name of RFAA
1 parent 20b5d69 commit d2c3b70

14 files changed

Lines changed: 19 additions & 19 deletions

‎notebooks/astex_diverse_inference_results_plotting.ipynb‎

Lines changed: 2 additions & 2 deletions
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@@ -211,7 +211,7 @@
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" \"diffdock\": \"DiffDock-L\",\n",
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" \"dynamicbind\": \"DynamicBind\",\n",
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" \"neuralplexer\": \"NeuralPLexer\",\n",
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" \"rfaa\": \"RoseTTAFold-AA\",\n",
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" \"rfaa\": \"RFAA\",\n",
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" \"chai-lab_ss\": \"Chai-1-Single-Seq\",\n",
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" \"chai-lab\": \"Chai-1\",\n",
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" \"alphafold3_ss\": \"AF3-Single-Seq\",\n",
@@ -1027,7 +1027,7 @@
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" \"DiffDock-L\",\n",
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" \"DynamicBind\",\n",
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" \"NeuralPLexer\",\n",
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" \"RoseTTAFold-AA\",\n",
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" \"RFAA\",\n",
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" \"DL-based blind\",\n",
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" \"Chai-1-Single-Seq\",\n",
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" \"Chai-1\",\n",

‎notebooks/astex_method_interaction_analysis_plotting.ipynb‎

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@@ -110,7 +110,7 @@
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" \"diffdock\": \"DiffDock-L\",\n",
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" \"dynamicbind\": \"DynamicBind\",\n",
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" \"neuralplexer\": \"NeuralPlexer\",\n",
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" \"rfaa\": \"RoseTTAFold-AA\",\n",
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" \"rfaa\": \"RFAA\",\n",
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" \"chai-lab_ss\": \"Chai-1-Single-Seq\",\n",
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" \"chai-lab\": \"Chai-1\",\n",
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" \"alphafold3_ss\": \"AF3-Single-Seq\",\n",

‎notebooks/astex_method_interaction_analysis_plotting.py‎

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@@ -75,7 +75,7 @@
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"diffdock": "DiffDock-L",
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"dynamicbind": "DynamicBind",
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"neuralplexer": "NeuralPlexer",
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"rfaa": "RoseTTAFold-AA",
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"rfaa": "RFAA",
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"chai-lab_ss": "Chai-1-Single-Seq",
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"chai-lab": "Chai-1",
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"alphafold3_ss": "AF3-Single-Seq",

‎notebooks/casp15_inference_results_plotting.ipynb‎

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@@ -87,7 +87,7 @@
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" \"diffdock\": \"DiffDock-L\",\n",
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" \"dynamicbind\": \"DynamicBind\",\n",
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" \"neuralplexer\": \"NeuralPlexer\",\n",
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" \"rfaa\": \"RoseTTAFold-AA\",\n",
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" \"rfaa\": \"RFAA\",\n",
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" \"chai-lab_ss\": \"Chai-1-Single-Seq\",\n",
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" \"chai-lab\": \"Chai-1\",\n",
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" \"alphafold3_ss\": \"AF3-Single-Seq\",\n",
@@ -819,7 +819,7 @@
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" \"DiffDock-L\",\n",
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" \"DynamicBind\",\n",
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" \"NeuralPlexer\",\n",
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" \"RoseTTAFold-AA\",\n",
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" \"RFAA\",\n",
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" \"DL-based blind\",\n",
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" \"Chai-1-Single-Seq\",\n",
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" \"Chai-1\",\n",
@@ -1144,7 +1144,7 @@
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" \"DiffDock-L\",\n",
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" \"DynamicBind\",\n",
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" \"NeuralPLexer\",\n",
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" \"RoseTTAFold-AA\",\n",
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" \"RFAA\",\n",
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" \"DL-based blind\",\n",
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" \"Chai-1-Single-Seq\",\n",
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" \"Chai-1\",\n",

‎notebooks/casp15_method_interaction_analysis_plotting.ipynb‎

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@@ -107,7 +107,7 @@
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" \"diffdock\": \"DiffDock-L\",\n",
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" \"dynamicbind\": \"DynamicBind\",\n",
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" \"neuralplexer\": \"NeuralPlexer\",\n",
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" \"rfaa\": \"RoseTTAFold-AA\",\n",
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" \"rfaa\": \"RFAA\",\n",
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" \"chai-lab_ss\": \"Chai-1-Single-Seq\",\n",
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" \"chai-lab\": \"Chai-1\",\n",
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" \"alphafold3_ss\": \"AF3-Single-Seq\",\n",

‎notebooks/casp15_method_interaction_analysis_plotting.py‎

Lines changed: 1 addition & 1 deletion
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@@ -72,7 +72,7 @@
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"diffdock": "DiffDock-L",
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"dynamicbind": "DynamicBind",
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"neuralplexer": "NeuralPlexer",
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"rfaa": "RoseTTAFold-AA",
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"rfaa": "RFAA",
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"chai-lab_ss": "Chai-1-Single-Seq",
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"chai-lab": "Chai-1",
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"alphafold3_ss": "AF3-Single-Seq",

‎notebooks/dockgen_inference_results_plotting.ipynb‎

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@@ -215,7 +215,7 @@
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" \"diffdock\": \"DiffDock-L\",\n",
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" \"dynamicbind\": \"DynamicBind\",\n",
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" \"neuralplexer\": \"NeuralPLexer\",\n",
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" \"rfaa\": \"RoseTTAFold-AA\",\n",
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" \"rfaa\": \"RFAA\",\n",
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" \"chai-lab_ss\": \"Chai-1-Single-Seq\",\n",
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" \"chai-lab\": \"Chai-1\",\n",
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" \"alphafold3_ss\": \"AF3-Single-Seq\",\n",
@@ -1042,7 +1042,7 @@
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" \"DiffDock-L\",\n",
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" \"DynamicBind\",\n",
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" \"NeuralPLexer\",\n",
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" \"RoseTTAFold-AA\",\n",
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" \"RFAA\",\n",
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" \"DL-based blind\",\n",
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" \"Chai-1-Single-Seq\",\n",
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" \"Chai-1\",\n",

‎notebooks/dockgen_method_interaction_analysis_plotting.ipynb‎

Lines changed: 1 addition & 1 deletion
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@@ -110,7 +110,7 @@
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" \"diffdock\": \"DiffDock-L\",\n",
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" \"dynamicbind\": \"DynamicBind\",\n",
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" \"neuralplexer\": \"NeuralPlexer\",\n",
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" \"rfaa\": \"RoseTTAFold-AA\",\n",
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" \"rfaa\": \"RFAA\",\n",
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" \"chai-lab_ss\": \"Chai-1-Single-Seq\",\n",
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" \"chai-lab\": \"Chai-1\",\n",
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" \"alphafold3_ss\": \"AF3-Single-Seq\",\n",

‎notebooks/dockgen_method_interaction_analysis_plotting.py‎

Lines changed: 1 addition & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -75,7 +75,7 @@
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"diffdock": "DiffDock-L",
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"dynamicbind": "DynamicBind",
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"neuralplexer": "NeuralPlexer",
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"rfaa": "RoseTTAFold-AA",
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"rfaa": "RFAA",
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"chai-lab_ss": "Chai-1-Single-Seq",
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"chai-lab": "Chai-1",
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"alphafold3_ss": "AF3-Single-Seq",

‎notebooks/failure_modes_analysis_plotting.ipynb‎

Lines changed: 1 addition & 1 deletion
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@@ -275,7 +275,7 @@
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" \"diffdock\": \"DiffDock-L\",\n",
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" \"dynamicbind\": \"DynamicBind\",\n",
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" \"neuralplexer\": \"NeuralPLexer\",\n",
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" \"rfaa\": \"RoseTTAFold-AA\",\n",
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" \"rfaa\": \"RFAA\",\n",
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" \"chai-lab_ss\": \"Chai-1-Single-Seq\",\n",
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" \"chai-lab\": \"Chai-1\",\n",
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" \"alphafold3_ss\": \"AF3-Single-Seq\",\n",

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