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This repository was archived by the owner on Mar 23, 2026. It is now read-only.
This repository was archived by the owner on Mar 23, 2026. It is now read-only.

Barkai Annotated features #64

Description

@cmatKhan

Create 2 barkai annotated features:

  1. calculate normalized enrichment. Use that to create a distribution for each promoter, and then use that to provide both a 1-sided (x>=X) and 2 sided score (b/c with this promoter distribution method, it isn't unreasonable to look at promoters that are depleted I think. not quite sure yet)

  2. Also call enrichment against the Mahendrawada 25 and Hahn controls (like Mahendrawada)

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