Adding setup script, need to run only this if using static binary but need to run install.sh and this if compiling from source.

Author: Snaedis Kristmundsdottir

install.sh

@@ -4,13 +4,5 @@ unzip -qq SeqAnHTS.zip
 unzip -qq htslib.zip
 make -C htslib-develop
 unzip -qq liblinear-2.01.zip
-echo "Unzipping and relocating markerInfo files"
-mkdir markerInfo
-for i in {1..22}; do gunzip -c chr${i}markerInfo.gz > markerInfo/chr${i}markerInfo; rm chr${i}markerInfo.gz; done
-mv longRepeats markerInfo/
-mv defaultModel markerInfo/
-echo "Unpacking kernel"
-gunzip kernel.tar.gz
-tar -xvf kernel.tar
 echo "Compiling binaries"
 make

setUp.sh

@@ -0,0 +1,12 @@
+#!/bin/bash
+echo "Unzipping and relocating markerInfo files"
+mkdir markerInfo
+for i in {1..22}; do gunzip -c chr${i}markerInfo.gz > markerInfo/chr${i}markerInfo; rm chr${i}markerInfo.gz; done
+mv longRepeats markerInfo/
+mv defaultModel markerInfo/
+echo "Unpacking kernel"
+gunzip kernel.tar.gz
+tar -xvf kernel.tar
+echo "Unpacking panel"
+gunzip panelMarkerInfo.tar.gz
+tar -xvf panelMarkerInfo.tar