Adjust analyser logic so that Tomo and SPA-related data processing is triggered if an extension is present; iterate through all contexts for the first file the analyser receives that is used to determine the context

Author: tieneupin

src/murfey/client/analyser.py

@@ -411,14 +411,11 @@ def _analyse(self, transferred_file: Path):
                 elif transferred_file.suffix == ".mdoc":
                     self._mdoc_for_reading = transferred_file
             if not self._context:
-                if not self._find_extension(transferred_file):
-                    logger.debug(f"No extension found for {transferred_file}")
-                    return
                 if not self._find_context(transferred_file):
                     logger.debug(f"Couldn't find context for {str(transferred_file)!r}")
                     return
-                elif self._extension:
-                    logger.info(f"Context found successfully for {transferred_file}")
+                logger.info(f"Context found successfully for {transferred_file}")
+                if self._find_extension(transferred_file):
                     try:
                         if self._context is not None:
                             self._context.post_first_transfer(
@@ -474,8 +471,9 @@ def _analyse(self, transferred_file: Path):
                                     "is not set"
                                 )
 
+            # Run through the contexts
             # Contexts that can be immediately posted without additional work
-            elif "CLEMContext" in str(self._context):
+            if "CLEMContext" in str(self._context):
                 logger.debug(f"File {transferred_file.name!r} is part of CLEM workflow")
                 self.post_transfer(transferred_file)
             elif "FIBContext" in str(self._context):