Skip to content

Genemania through R #31

@valentinapapa

Description

@valentinapapa

Hello,
I'm trying to use genemania through R.
The problem I encounter is in importing some types of networks.
I would need to create a network with the following characteristics:
organism = Homo Sapiens
networks = Pathway, Genetic Interactions, Physical Interactions, Predicted, Consolidated-Pathways-2013
combiningMethod = Go biological process-based
attrLimit = 100
geneLimit = 100
genes = KRAS

For this reason, the query I enter is:

genemania_command<- "genemania search organism=9606 networks=path,pi,gi,predict combiningMethod=BP attrLimit=100 geneLimit=100 genes= KRAS"
commandsRun(genemania_command)

How can I also provide the Consolidated-Pathways-2013 as input?
Furthermore, for another type of network, I would need to provide the Drug-interactions-2020 attribute as input. How can I do?

Metadata

Metadata

Assignees

No one assigned

    Labels

    No labels
    No labels

    Type

    No type

    Projects

    No projects

    Milestone

    No milestone

    Relationships

    None yet

    Development

    No branches or pull requests

    Issue actions