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README.md

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[![Build Status](https://travis-ci.com/h3abionet/16S-rDNA-dada2-pipeline.svg?branch=master)](https://travis-ci.com/h3abionet/16S-rDNA-dada2-pipeline)
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[![Build Status](https://travis-ci.com/h3abionet/TADA.svg?branch=master)](https://travis-ci.com/h3abionet/TADA)
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<p>
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<img align="left" src="./assets/cbio_logo.png" width="240" hspace="50"/>
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<img align="left" src="./assets/HPCBio.png" width="350" hspace="50"/>
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</br></br></br>
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</p>
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# 16S rRNA gene amplicon sequencing pipeline using DADA2, implemented in Nextflow
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# TADA - Targeted Amplicon Diversity Analysis using DADA2, implemented in Nextflow
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A dada2-based workflow using the Nextflow workflow manager. The basic pipeline is currently implemented, including some basic read-tracking. This pipeline is adapted from https://github.com/HPCBio/dada2-Nextflow for implementation on the UCT high-performance compute cluster
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