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ontologies.Makefile
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1661 lines (1058 loc) · 39.3 KB
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download/swo.owl: STAMP
curl -L -s http://purl.obolibrary.org/obo/swo.owl > $@.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/swo.owl
db/swo.owl: download/swo.owl
robot merge -i $< -o $@
download/chiro.owl: STAMP
curl -L -s http://purl.obolibrary.org/obo/chiro.owl > $@.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/chiro.owl
db/chiro.owl: download/chiro.owl
robot relax -i $< merge -o $@
download/pcl.owl: STAMP
curl -L -s http://purl.obolibrary.org/obo/pcl.owl > $@.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/pcl.owl
db/pcl.owl: download/pcl.owl
cp $< $@
download/chemessence.owl: STAMP
curl -L -s https://github.com/cmungall/chemessence/releases/latest/download/chemessence.owl > $@.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/chemessence.owl
db/chemessence.owl: download/chemessence.owl
cp $< $@
download/ogco.owl: STAMP
curl -L -s https://raw.githubusercontent.com/cmungall/chemessence/refs/heads/main/src/ontology/components/ogco.owl > $@.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/ogco.owl
db/ogco.owl: download/ogco.owl
cp $< $@
download/ncit.owl: STAMP
curl -L -s http://purl.obolibrary.org/obo/ncit.owl > $@.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/ncit.owl
db/ncit.owl: download/ncit.owl
robot relax -i $< merge -o $@
download/fma.owl: STAMP
curl -L -s http://sig.biostr.washington.edu/share/downloads/fma/release/latest/fma.owl > $@.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/fma.owl
db/fma.owl: download/fma.owl
cp $< $@
download/maxo.owl: STAMP
curl -L -s http://purl.obolibrary.org/obo/maxo.owl > $@.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/maxo.owl
db/maxo.owl: download/maxo.owl
robot relax -i $< merge reason -r structural -o $@
download/foodon.owl: STAMP
curl -L -s http://purl.obolibrary.org/obo/foodon.owl > $@.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/foodon.owl
db/foodon.owl: download/foodon.owl
robot merge -i $< relax reduce -c true -o $@
download/chebiplus.owl: STAMP
curl -L -s http://purl.obolibrary.org/obo/chebi.owl > $@.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/chebiplus.owl
db/chebiplus.owl: download/chebiplus.owl
robot merge -i $< -I http://purl.obolibrary.org/obo/chiro.owl relax -o $@
download/msio.owl: STAMP
curl -L -s https://raw.githubusercontent.com/MSI-Metabolomics-Standards-Initiative/MSIO/master/releases/latest_release/MSIO-merged-reasoned.owl > $@.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/msio.owl
db/msio.owl: download/msio.owl
cp $< $@
download/chemrof.owl: STAMP
curl -L -s https://w3id.org/chemrof/chemrof.owl.ttl > $@.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/chemrof.owl
db/chemrof.owl: download/chemrof.owl
robot merge -i $< -o $@
download/deb.owl: STAMP
curl -L -s http://rest.matportal.org/ontologies/DEB/submissions/1/download?apikey=66c82e77-ce0d-4385-8056-a95898e47ebb > $@.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/deb.owl
db/deb.owl: download/deb.owl
cp $< $@
download/matpo.owl: STAMP
curl -L -s http://bimerr.iot.linkeddata.es/def/material-properties# > $@.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/matpo.owl
db/matpo.owl: download/matpo.owl
cp $< $@
download/panet.owl: STAMP
curl -L -s http://purl.org/pan-science/PaNET/PaNET.owl > $@.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/panet.owl
db/panet.owl: download/panet.owl
cp $< $@
download/phenx.owl: STAMP
curl -L -s https://data.bioontology.org/ontologies/PHENX/download?apikey=8b5b7825-538d-40e0-9e9e-5ab9274a9aeb > $@.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/phenx.owl
db/phenx.owl: download/phenx.owl
cp $< $@
download/pride.owl: STAMP
curl -L -s https://raw.githubusercontent.com/PRIDE-Archive/pride-ontology/master/pride_cv.obo > $@.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/pride.owl
db/pride.owl: download/pride.owl
robot relax -i $< merge -o $@
download/sosa.owl: STAMP
curl -L -s http://www.w3.org/ns/sosa/ > $@.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/sosa.owl
db/sosa.owl: download/sosa.owl
robot merge -i $< -o $@
download/emi.owl: STAMP
curl -L -s https://purl.org/emi > $@.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/emi.owl
db/emi.owl: download/emi.owl
robot merge -i $< -o $@
download/npc.owl: STAMP
curl -L -s https://purl.org/npc > $@.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/npc.owl
db/npc.owl: download/npc.owl
robot convert -i $< -o $@
download/modl.owl: STAMP
curl -L -s https://raw.githubusercontent.com/Data-Semantics-Laboratory/modular-ontology-design-library/master/MODL.owl > $@.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/modl.owl
db/modl.owl: download/modl.owl
cp $< $@
download/phenio.owl: STAMP
curl -L -s https://github.com/monarch-initiative/phenio/releases/latest/download/phenio.owl.gz | gzip -dc > $@.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/phenio.owl
db/phenio.owl: download/phenio.owl
cp $< $@
download/comploinc.owl: STAMP
curl -L -s https://github.com/loinc/comp-loinc/releases/download/v2022-11-05/merged_reasoned_loinc.owl > $@.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/comploinc.owl
db/comploinc.owl: download/comploinc.owl
robot relax -i $< merge -o $@
download/hba.owl: STAMP
curl -L -s https://github.com/brain-bican/human_brain_atlas_ontology/raw/main/hbao-base.owl > $@.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/hba.owl
db/hba.owl: download/hba.owl
cp $< $@
download/mba.owl: STAMP
curl -L -s https://github.com/brain-bican/mouse_brain_atlas_ontology/raw/main/mbao-base.owl > $@.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/mba.owl
db/mba.owl: download/mba.owl
cp $< $@
download/dmba.owl: STAMP
curl -L -s https://github.com/brain-bican/developing_mouse_brain_atlas_ontology/raw/main/dmbao-base.owl > $@.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/dmba.owl
db/dmba.owl: download/dmba.owl
cp $< $@
download/dhba.owl: STAMP
curl -L -s https://github.com/brain-bican/developing_human_brain_atlas_ontology/raw/main/dhbao-base.owl > $@.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/dhba.owl
db/dhba.owl: download/dhba.owl
cp $< $@
download/pba.owl: STAMP
curl -L -s https://github.com/brain-bican/primate_brain_atlas_ontology/raw/main/pbao-base.owl > $@.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/pba.owl
db/pba.owl: download/pba.owl
cp $< $@
download/bero.owl: STAMP
curl -L -s https://github.com/berkeleybop/bero/releases/download/2022-05-26/bero.owl > $@.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/bero.owl
db/bero.owl: download/bero.owl
cp $< $@
download/aio.owl: STAMP
curl -L -s https://raw.githubusercontent.com/berkeleybop/artificial-intelligence-ontology/main/aio.owl > $@.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/aio.owl
db/aio.owl: download/aio.owl
cp $< $@
download/reacto.owl: STAMP
curl -L -s http://purl.obolibrary.org/obo/go/extensions/reacto.owl > $@.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/reacto.owl
db/reacto.owl: download/reacto.owl
cp $< $@
download/xsmo.owl: STAMP
curl -L -s https://download.xenbase.org/xenbase/Ontologies/XSMO/XSMO_1.1/XSMO_1.1.owl > $@.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/xsmo.owl
db/xsmo.owl: download/xsmo.owl
cp $< $@
download/bcio.owl: STAMP
curl -L -s http://humanbehaviourchange.org/ontology/bcio.owl > $@.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/bcio.owl
db/bcio.owl: download/bcio.owl
cp $< $@
download/sio.owl: STAMP
curl -L -s http://semanticscience.org/ontology/sio.owl > $@.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/sio.owl
db/sio.owl: download/sio.owl
cp $< $@
download/icd10who.owl: STAMP
curl -L -s https://github.com/monarch-initiative/mondo-ingest/releases/latest/download/icd10who.owl > $@.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/icd10who.owl
db/icd10who.owl: download/icd10who.owl
cp $< $@
download/icd11f.owl: STAMP
curl -L -s https://github.com/monarch-initiative/mondo-ingest/releases/latest/download/icd11foundation.owl > $@.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/icd11f.owl
db/icd11f.owl: download/icd11f.owl
cp $< $@
download/ordo.owl: STAMP
curl -L -s https://github.com/monarch-initiative/mondo-ingest/releases/latest/download/ordo.owl > $@.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/ordo.owl
db/ordo.owl: download/ordo.owl
cp $< $@
download/gard.owl: STAMP
curl -L -s https://github.com/monarch-initiative/mondo-ingest/releases/latest/download/gard.owl > $@.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/gard.owl
db/gard.owl: download/gard.owl
cp $< $@
download/icd10cm.owl: STAMP
curl -L -s https://github.com/monarch-initiative/mondo-ingest/releases/latest/download/icd10cm.owl > $@.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/icd10cm.owl
db/icd10cm.owl: download/icd10cm.owl
cp $< $@
download/omim.owl: STAMP
curl -L -s https://github.com/monarch-initiative/mondo-ingest/releases/latest/download/omim.owl > $@.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/omim.owl
db/omim.owl: download/omim.owl
cp $< $@
download/mondo-ingest.owl: STAMP
curl -L -s https://github.com/monarch-initiative/mondo-ingest/releases/latest/download/mondo-ingest.owl > $@.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/mondo-ingest.owl
db/mondo-ingest.owl: download/mondo-ingest.owl
cp $< $@
download/oeo.owl: STAMP
curl -L -s https://openenergyplatform.org/ontology/oeo/releases/oeo-full.owl > $@.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/oeo.owl
db/oeo.owl: download/oeo.owl
cp $< $@
download/envthes.owl: STAMP
curl -L -s https://vocabs.lter-europe.net/rest/v1/envthes/data?format=text/turtle > $@.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/envthes.owl
db/envthes.owl: download/envthes.owl
robot query -i $< --update sparql/skos-to-owl.ru -o $@
download/wifire.owl: STAMP
curl -L -s https://raw.githubusercontent.com/WIFIRE-Lab/WIFIRE-commons-ontology/master/WIFIRE-commons-ontology-V1.owl > $@.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/wifire.owl
db/wifire.owl: download/wifire.owl
cp $< $@
download/taxslim.owl: STAMP
curl -L -s http://purl.obolibrary.org/obo/ncbitaxon/subsets/taxslim.obo > $@.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/taxslim.owl
db/taxslim.owl: download/taxslim.owl
robot convert -i $< -o $@
download/goldterms.owl: STAMP
curl -L -s https://raw.githubusercontent.com/cmungall/gold-ontology/main/gold.owl > $@.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/goldterms.owl
db/goldterms.owl: download/goldterms.owl
robot relax -i $< reason -o $@
download/sdgio.owl: STAMP
curl -L -s https://raw.githubusercontent.com/SDG-InterfaceOntology/sdgio/master/sdgio.owl > $@.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/sdgio.owl
db/sdgio.owl: download/sdgio.owl
cp $< $@
download/kin.owl: STAMP
curl -L -s http://purl.org/ga4gh/kin.owl > $@.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/kin.owl
db/kin.owl: download/kin.owl
robot reason -i $< -o $@
download/metpo.owl: STAMP
curl -L -s https://raw.githubusercontent.com/berkeleybop/metpo/refs/heads/main/metpo.owl > $@.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/metpo.owl
db/metpo.owl: download/metpo.owl
robot reason -i $< -o $@
download/d3o.owl: STAMP
curl -L -s https://data.bioontology.org/ontologies/D3O/submissions/3/download?apikey=8b5b7825-538d-40e0-9e9e-5ab9274a9aeb > $@.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/d3o.owl
db/d3o.owl: download/d3o.owl
robot convert -i $< -o $@
download/biovoices.owl: STAMP
curl -L -s https://zenodo.org/record/5589773/files/ontology.owl?download=1 > $@.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/biovoices.owl
db/biovoices.owl: download/biovoices.owl
robot relax -i $< merge -o $@
download/omop.owl: STAMP
curl -L -s None > $@.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/omop.owl
db/omop.owl: download/omop.owl
cp $< $@
download/comet.owl: STAMP
curl -L -s https://raw.githubusercontent.com/linkml/linkml-common/main/project/owl/linkml_common.owl.ttl > $@.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/comet.owl
db/comet.owl: download/comet.owl
robot relax -i $< merge -o $@
download/cco.owl: STAMP
curl -L -s http://www.ontologyrepository.com/CommonCoreOntologies/Mid/AllCoreOntology > $@.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/cco.owl
db/cco.owl: download/cco.owl
robot merge -i $< relax -o $@
download/occo.owl: STAMP
curl -L -s https://raw.githubusercontent.com/Occupation-Ontology/OccO/main/src/ontology/occo-merged.owl > $@.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/occo.owl
db/occo.owl: download/occo.owl
cp $< $@
download/iof.owl: STAMP
curl -L -s https://spec.industrialontologies.org/ontology/AboutIOFProd/ > $@.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/iof.owl
db/iof.owl: download/iof.owl
robot relax -i $< merge -o $@
download/upa.owl: STAMP
curl -L -s http://purl.obolibrary.org/obo/upa.owl > $@.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/upa.owl
db/upa.owl: download/upa.owl
cp $< $@
download/go.owl: STAMP
curl -L -s http://purl.obolibrary.org/obo/go/extensions/go-plus.owl > $@.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/go.owl
db/go.owl: download/go.owl
cp $< $@
download/go-lego.owl: STAMP
curl -L -s http://purl.obolibrary.org/obo/go/extensions/go-lego.owl > $@.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/go-lego.owl
db/go-lego.owl: download/go-lego.owl
cp $< $@
download/go-amigo.owl: STAMP
curl -L -s http://purl.obolibrary.org/obo/go/extensions/go-amigo.owl > $@.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/go-amigo.owl
db/go-amigo.owl: download/go-amigo.owl
cp $< $@
download/neo.owl: STAMP
curl -L -s http://purl.obolibrary.org/obo/go/noctua/neo.owl > $@.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/neo.owl
db/neo.owl: download/neo.owl
cp $< $@
download/bao.owl: STAMP
curl -L -s http://www.bioassayontology.org/bao/bao_complete.owl > $@.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/bao.owl
db/bao.owl: download/bao.owl
robot merge -i $< -o $@
download/orcid.owl: STAMP
curl -L -s https://w3id.org/orcidio/orcidio.owl > $@.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/orcid.owl
db/orcid.owl: download/orcid.owl
cp $< $@
download/ror.owl: STAMP
curl -L -s https://w3id.org/biopragmatics/resources/ror/ror.owl.gz | gzip -dc > $@.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/ror.owl
db/ror.owl: download/ror.owl
cp $< $@
download/cpont.owl: STAMP
curl -L -s https://w3id.org/cpont/cpont.owl > $@.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/cpont.owl
db/cpont.owl: download/cpont.owl
cp $< $@
download/biolink.owl: STAMP
curl -L -s https://w3id.org/biolink/biolink-model.owl.ttl > $@.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/biolink.owl
db/biolink.owl: download/biolink.owl
robot merge -i $< -o $@
download/biopax.owl: STAMP
curl -L -s http://www.biopax.org/release/biopax-level3.owl > $@.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/biopax.owl
db/biopax.owl: download/biopax.owl
cp $< $@
download/enanomapper.owl: STAMP
curl -L -s http://enanomapper.github.io/ontologies/enanomapper.owl > $@.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/enanomapper.owl
db/enanomapper.owl: download/enanomapper.owl
robot merge -i $< -o $@
download/mlo.owl: STAMP
curl -L -s https://raw.githubusercontent.com/berkeleybop/artificial-intelligence-ontology/v2023-09-11/external/ml-ontology-202010021305.owl > $@.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/mlo.owl
db/mlo.owl: download/mlo.owl
robot merge -i $< -o $@
download/ito.owl: STAMP
curl -L -s https://github.com/OpenBioLink/ITO/raw/master/ITO.owl.zip > $@.zip.tmp && unzip -p $@.zip.tmp ITO.owl > $@.tmp && rm $@.zip.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/ito.owl
db/ito.owl: download/ito.owl
cp $< $@
download/chemont.owl: STAMP
curl -L -s http://classyfire.wishartlab.com/system/downloads/1_0/chemont/ChemOnt_2_1.obo.zip > $@.zip.tmp && unzip -p $@.zip.tmp ChemOnt_2_1.obo > $@.tmp && rm $@.zip.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/chemont.owl
db/chemont.owl: download/chemont.owl
robot convert -i $< -o $@
download/molgenie.owl: STAMP
curl -L -s https://github.com/MolGenie/ontology/blob/main/mol_classes_ext_2024-11-20.obo > $@.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/molgenie.owl
db/molgenie.owl: download/molgenie.owl
robot convert -i $< -o $@
download/cso.owl: STAMP
curl -L -s https://cso.kmi.open.ac.uk/download/version-3.3/CSO.3.3.owl.zip > $@.zip.tmp && unzip -p $@.zip.tmp CSO.3.3.owl > $@.tmp && rm $@.zip.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/cso.owl
db/cso.owl: download/cso.owl
cp $< $@
download/obiws.owl: STAMP
curl -L -s https://data.bioontology.org/ontologies/OBIWS/submissions/2/download?apikey=8b5b7825-538d-40e0-9e9e-5ab9274a9aeb > $@.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/obiws.owl
db/obiws.owl: download/obiws.owl
cp $< $@
download/biopragmatics-reactome.owl: STAMP
curl -L -s https://w3id.org/biopragmatics/resources/reactome/reactome.obo > $@.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/biopragmatics-reactome.owl
db/biopragmatics-reactome.owl: download/biopragmatics-reactome.owl
cp $< $@
download/reactome-hs.owl: STAMP
curl -L -s https://reactome.org/download/current/biopax.zip > $@.zip.tmp && unzip -p $@.zip.tmp Homo_sapiens.owl > $@.tmp && rm $@.zip.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/reactome-hs.owl
db/reactome-hs.owl: download/reactome-hs.owl
cp $< $@
download/reactome-mm.owl: STAMP
curl -L -s https://reactome.org/download/current/biopax.zip > $@.zip.tmp && unzip -p $@.zip.tmp Mus_musculus.owl > $@.tmp && rm $@.zip.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/reactome-mm.owl
db/reactome-mm.owl: download/reactome-mm.owl
cp $< $@
download/efo.owl: STAMP
curl -L -s http://www.ebi.ac.uk/efo/efo.owl > $@.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/efo.owl
db/efo.owl: download/efo.owl
robot merge -i $< -o $@
download/hcao.owl: STAMP
curl -L -s https://raw.githubusercontent.com/HumanCellAtlas/ontology/master/hcao.owl > $@.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/hcao.owl
db/hcao.owl: download/hcao.owl
cp $< $@
download/hpinternational.owl: STAMP
curl -L -s http://purl.obolibrary.org/obo/hp/hp-international.owl > $@.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/hpinternational.owl
db/hpinternational.owl: download/hpinternational.owl
cp $< $@
download/edam.owl: STAMP
curl -L -s http://edamontology.org/EDAM.owl > $@.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/edam.owl
db/edam.owl: download/edam.owl
cp $< $@
download/chr.owl: STAMP
curl -L -s https://raw.githubusercontent.com/monarch-initiative/monochrom/master/chr.owl > $@.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/chr.owl
db/chr.owl: download/chr.owl
cp $< $@
download/sweetAll.owl: STAMP
curl -L -s http://sweetontology.net/sweetAll > $@.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/sweetAll.owl
db/sweetAll.owl: download/sweetAll.owl
robot merge -i $< -o $@
download/oboe-core.owl: STAMP
curl -L -s http://ecoinformatics.org/oboe/oboe.1.0/oboe-core.owl > $@.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/oboe-core.owl
db/oboe-core.owl: download/oboe-core.owl
cp $< $@
download/oboe-standards.owl: STAMP
curl -L -s http://ecoinformatics.org/oboe/oboe.1.0/oboe-standards.owl > $@.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/oboe-standards.owl
db/oboe-standards.owl: download/oboe-standards.owl
cp $< $@
download/lov.owl: STAMP
curl -L -s https://lov.linkeddata.es/lov.n3.gz | gzip -dc > $@.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/lov.owl
db/lov.owl: download/lov.owl
robot merge -i $< -o $@
download/schema-dot-org.owl: STAMP
curl -L -s https://schema.org/version/latest/schemaorg-current-https.rdf > $@.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/schema-dot-org.owl
db/schema-dot-org.owl: download/schema-dot-org.owl
cp $< $@
download/prov.owl: STAMP
curl -L -s http://www.w3.org/ns/prov.owl > $@.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/prov.owl
db/prov.owl: download/prov.owl
cp $< $@
download/dtype.owl: STAMP
curl -L -s http://www.linkedmodel.org/schema/dtype > $@.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/dtype.owl
db/dtype.owl: download/dtype.owl
cp $< $@
download/vaem.owl: STAMP
curl -L -s http://www.linkedmodel.org/schema/vaem > $@.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/vaem.owl
db/vaem.owl: download/vaem.owl
cp $< $@
download/qudtunit.owl: STAMP
curl -L -s http://qudt.org/vocab/unit > $@.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/qudtunit.owl
db/qudtunit.owl: download/qudtunit.owl
robot merge -i $< -o $@