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joss/paper.bib

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@@ -173,6 +173,7 @@ @article{medema2014pep2path
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title={Pep2Path: automated mass spectrometry-guided genome mining of peptidic natural products},
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author={Medema, Marnix H and Paalvast, Yared and Nguyen, Don D and Melnik, Alexey and Dorrestein, Pieter C and Takano, Eriko and Breitling, Rainer},
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journal={PLoS computational biology},
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doi = {10.1371/journal.pcbi.1003822},
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volume={10},
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number={9},
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pages={e1003822},
@@ -184,6 +185,7 @@ @article{cao2019metaminer
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title={MetaMiner: a scalable peptidogenomics approach for discovery of ribosomal peptide natural products with blind modifications from microbial communities},
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author={Cao, Liu and Gurevich, Alexey and Alexander, Kelsey L and Naman, C Benjamin and Le{\~a}o, Tiago and Glukhov, Evgenia and Luzzatto-Knaan, Tal and Vargas, Fernando and Quinn, Robby and Bouslimani, Amina and others},
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journal={Cell systems},
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doi={10.1016/j.cels.2019.09.004},
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volume={9},
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number={6},
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pages={600--608},
@@ -195,6 +197,7 @@ @article{mohimani2017metarippquest
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title={MetaRiPPquest: a peptidogenomics approach for the discovery of ribosomally synthesized and post-translationally modified peptides},
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author={Mohimani, Hosein and Gurevich, Alexey and Alexander, Kelsey L and Naman, C Benjamin and Leao, Tiago and Glukhov, Evgenia and Moss, Nathan A and Luzzatto-Knaan, Tal and Vargas, Fernando and Nothias, Louis-Felix and others},
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journal={BioRxiv},
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doi={doi.org/10.1101/227504},
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pages={227504},
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year={2017},
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publisher={Cold Spring Harbor Laboratory}
@@ -204,6 +207,7 @@ @article{merwin2020deepripp
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title={DeepRiPP integrates multiomics data to automate discovery of novel ribosomally synthesized natural products},
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author={Merwin, Nishanth J and Mousa, Walaa K and Dejong, Chris A and Skinnider, Michael A and Cannon, Michael J and Li, Haoxin and Dial, Keshav and Gunabalasingam, Mathusan and Johnston, Chad and Magarvey, Nathan A},
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journal={Proceedings of the National Academy of Sciences},
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doi{10.1073/pnas.1901493116},
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volume={117},
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number={1},
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pages={371--380},
@@ -215,9 +219,10 @@ @article{boldt2026phylogeny
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title={Phylogeny-Aware Metabologenomics Accurately Assigns Natural Products to Biosynthetic Gene Clusters},
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author={Boldt, Judith and Porten, Christoph and Haeckl, FP Jake and Hug, Joachim J and Panter, Fabian and Steglich, Matthias and Wink, Joachim and Overmann, J{\"o}rg and G{\"o}ker, Markus and Krug, Daniel and others},
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journal={Microbial Biotechnology},
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doi={10.1111/1751-7915.70298},
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volume={19},
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number={1},
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pages={e70298},
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year={2026},
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publisher={Wiley Online Library}
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}
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}

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