Start run notes

Author: zmoon

02-run.md

@@ -5,14 +5,53 @@ subtitle: Running MPAS on NSF NCAR Derecho
 
 # Global
 
+We will use the quasi-uniform 240-km mesh (10242 cells),
+as in the [official virtual tutorial](https://www2.mmm.ucar.edu/projects/mpas/tutorial/Virtual2025/)
+(section 1.3).
+
+First we build out our run directory.
+
+```{code} bash
+cd $SCRATCH
+mkdir mpas-global-240km
+cd $_
+ln -s /glade/campaign/mmm/wmr/mpas_tutorial/meshes/x1.10242.grid.nc .
+ln -s /glade/campaign/mmm/wmr/mpas_tutorial/meshes/x1.10242.graph.info.part.16 .
+cp /glade/campaign/mmm/wmr/mpas_tutorial/job_scripts/init_real.pbs .
+```
+
+TODO: above job script is for GNU, gotta update
+
+```bash
+qsub init_real.pbs -A UTAM0025
+```
+
+:::{tip}
+
+Get info about running jobs.
+
+```bash
+qstat -u $USER
+```
+
+See more:
+
+```bash
+qstat -u $USER -f -w
+```
+
+:::
+
 # Regional
 
-Limited-area domain as in:
+We will use the limited-area domain as in:
 
 - https://doi.org/10.1029/2023MS004070
 - https://doi.org/10.1029/2024GL112341
 - https://doi.org/10.22541/essoar.174547926.68665522/v1
 - https://doi.org/10.22541/essoar.174547944.43729039/v1
 - https://github.com/knubez/MPAS-Model/tree/isolevels-v8
 
+created by rotating, moving, and cropping the `x5.8060930` global 15--3-km elliptical refinement mesh.
+
 ## Creating LBCs