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Label the tables
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02-run.md

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@@ -40,6 +40,9 @@ Now we edit the `init_atmosphere` config files to set up for generating the stat
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Update `namelist.init_atmosphere` with these settings:
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:::{table} `namelist.init_atmosphere` settings for static file creation for the global example
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:label: global-namelist-static
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| parameter | value |
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| ----------------------------------------------- | ---------------------------------------- |
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| `nhyd_model.config_init_case` | `7` [^init-case7] |
@@ -53,6 +56,8 @@ Update `namelist.init_atmosphere` with these settings:
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| `preproc_stages.config_frac_seaice` | `false` |
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| `decomposition.config_block_decomp_file_prefix` | `'x1.10242.graph.info.part.'` |
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:::
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[^init-case7]: Case 7 is the "real-data initialization" case.
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[^gdp]: Another geog data path option is `/glade/campaign/mmm/wmr/mpas_tutorial/mpas_static/`.
@@ -152,6 +157,9 @@ On Derecho, this tool is available at
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Update `namelist.init_atmosphere` with these settings:
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:::{table} `namelist.init_atmosphere` settings for initial conditions for the global example
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:label: global-namelist-ic
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| parameter | value |
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| ----------------------------------------------- | ----------------------------- |
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| `nhyd_model.config_init_case` | `7` |
@@ -166,6 +174,8 @@ Update `namelist.init_atmosphere` with these settings:
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| `preproc_stages.config_frac_seaice` | `true` |
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| `decomposition.config_block_decomp_file_prefix` | `'x1.10242.graph.info.part.'` |
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:::
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Then, in `streams.init_atmosphere`, set the input file name template to `x1.10242.static.nc`
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(the static file we just created),
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and the output file name template to `Africa.init.nc`.
@@ -189,6 +199,9 @@ See Section 3.2 in the [official virtual tutorial](https://www2.mmm.ucar.edu/pro
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Update `namelist.atmosphere` with these settings:
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:::{table} `namelist.atmosphere` settings for the global example
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:label: global-namelist-run
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| parameter | value |
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| ----------------------------------------------- | ----------------------------- |
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| `nhyd_model.config_dt` | `1200.0` |
@@ -198,6 +211,8 @@ Update `namelist.atmosphere` with these settings:
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| `nhyd_model.config_radtsw_interval` | `'01:00:00'` |
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| `decomposition.config_block_decomp_file_prefix` | `'x1.10242.graph.info.part.'` |
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:::
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Then, in `streams.atmosphere`, set the input file name template to `x1.10242.init.nc`
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(the initial conditions file we just created).
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@@ -306,6 +321,9 @@ ln -s /glade/derecho/scratch/zmoon/mpas-africa/FILE:* .
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Update `namelist.init_atmosphere` with these settings:
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:::{table} `namelist.init_atmosphere` settings for initial conditions for the regional example
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:label: africa-namelist-ic
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| parameter | value |
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| ----------------------------------------------- | --------------------------- |
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| `nhyd_model.config_init_case` | `7` |
@@ -320,6 +338,8 @@ Update `namelist.init_atmosphere` with these settings:
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| `preproc_stages.config_frac_seaice` | `true` |
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| `decomposition.config_block_decomp_file_prefix` | `'Africa.graph.info.part.'` |
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:::
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Then, in `streams.init_atmosphere`, set the input file name template to `Africa.static.nc`
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and the output file name template to `Africa.init.nc`.
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@@ -353,6 +373,9 @@ qsub init.pbs
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Update `namelist.init_atmosphere` with these settings:
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:::{table} `namelist.init_atmosphere` settings for BC generation for the regional example
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:label: africa-namelist-bc
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| parameter | value |
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| ----------------------------------------------- | --------------------------- |
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| `nhyd_model.config_init_case` | `9` |
@@ -368,6 +391,8 @@ Update `namelist.init_atmosphere` with these settings:
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| `preproc_stages.config_frac_seaice` | `true` |
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| `decomposition.config_block_decomp_file_prefix` | `'Africa.graph.info.part.'` |
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👆 The differences are that now we are using init case 9,
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and we need to set a stop time.
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@@ -386,6 +411,9 @@ We will again skip creating [surface update](#sfc-update) files.
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Update `namelist.atmosphere` with these settings:
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:::{table} `namelist.atmosphere` settings for the regional example
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:label: africa-namelist-run
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| parameter | value |
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| ----------------------------------------------- | --------------------------- |
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| `nhyd_model.config_dt` | `13.0` |
@@ -396,6 +424,8 @@ Update `namelist.atmosphere` with these settings:
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| `physics.config_physics_suite` | `'convection_permitting'` |
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| `decomposition.config_block_decomp_file_prefix` | `'Africa.graph.info.part.'` |
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:::
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👆 Note that we have set a much smaller time step than in the coarse global example,
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we use the default RT interval,
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and we have selected the convection-permitting physics suite.

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