Skip to content

Commit 167782e

Browse files
pgleesonpgleeson
committed
Merge branch 'development' into experimental
2 parents b116e1f + 49dcb1a commit 167782e

13 files changed

Lines changed: 39 additions & 37 deletions

‎.github/workflows/omv-ci.yml‎

Lines changed: 2 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -9,11 +9,11 @@ on:
99
jobs:
1010
build:
1111

12-
runs-on: ubuntu-latest
12+
runs-on: ubuntu-22.04
1313
strategy:
1414
fail-fast: false
1515
matrix:
16-
python-version: [ "3.9", "3.10", "3.11" ] # Brian no longer supported on py3.8
16+
python-version: [ "3.9", "3.10", "3.12" ] # Brian no longer supported on py3.8
1717
engine: [ jNeuroML, jNeuroML_NEURON, jNeuroML_PyNN_NEURON, jNeuroML_validate, PyNN_NEURON, PyNN_Nest, PyNN_NeuroML, PyNN_Brian2]
1818

1919
steps:

‎NeuroML2/ConnectionsTest.net.nml‎

Lines changed: 12 additions & 12 deletions
Original file line numberDiff line numberDiff line change
@@ -2,8 +2,8 @@
22
<notes>
33
This NeuroML 2 file has been generated from:
44
PyNN v0.11.0
5-
libNeuroML v0.6.3
6-
pyNeuroML v1.3.7
5+
libNeuroML v0.6.6
6+
pyNeuroML v1.3.17
77
</notes>
88
<IF_cond_alpha id="IF_cond_alpha_pop_pre" cm="1.0" i_offset="0.9" tau_syn_E="2.0" tau_syn_I="5.0" v_init="-65.0" tau_m="20.0" tau_refrac="5.0" v_reset="-65.0" v_rest="-65.0" v_thresh="-50.0" e_rev_E="0.0" e_rev_I="-70.0"/>
99
<IF_cond_alpha id="IF_cond_alpha_pop_post" cm="1.0" i_offset="0.9" tau_syn_E="2.0" tau_syn_I="5.0" v_init="-65.0" tau_m="20.0" tau_refrac="5.0" v_reset="-65.0" v_rest="-65.0" v_thresh="-50.0" e_rev_E="0.0" e_rev_I="-70.0"/>
@@ -17,38 +17,38 @@
1717
<property tag="radius" value="5"/>
1818
<property tag="color" value="0 0.6 0"/>
1919
<instance id="0">
20-
<location x="-9.771402205615921" y="41.107735197887862" z="8.380479496098125"/>
20+
<location x="-1.31495019186989" y="-62.623379985358966" z="47.974306997120507"/>
2121
</instance>
2222
<instance id="1">
23-
<location x="11.787241779479075" y="-22.917415323944468" z="-69.969358778846896"/>
23+
<location x="-11.316599778102976" y="77.237729164541861" z="10.363334370115584"/>
2424
</instance>
2525
<instance id="2">
26-
<location x="24.148166862976762" y="-10.126267539995236" z="-6.507356698049249"/>
26+
<location x="-13.101393203595046" y="4.767600528622751" z="43.058005998318038"/>
2727
</instance>
2828
<instance id="3">
29-
<location x="-14.878199498615952" y="49.650874267039804" z="18.835272881150388"/>
29+
<location x="-0.257715248679702" y="-56.991911516152641" z="59.550063229299852"/>
3030
</instance>
3131
<instance id="4">
32-
<location x="37.92567221050809" y="-22.437678624311431" z="-38.190180651135641"/>
32+
<location x="16.994662045768337" y="-79.627060327641004" z="52.365678212799338"/>
3333
</instance>
3434
</population>
3535
<population id="pop_post" component="IF_cond_alpha_pop_post" size="5" type="populationList">
3636
<property tag="radius" value="5"/>
3737
<property tag="color" value="0 0.2 0.6"/>
3838
<instance id="0">
39-
<location x="-30.357177121657621" y="148.821597074248928" z="41.550393258456353"/>
39+
<location x="-31.381154376297783" y="161.440369452556951" z="55.02190098778852"/>
4040
</instance>
4141
<instance id="1">
42-
<location x="-75.487951984450333" y="241.449664932469261" z="4.06371645195327"/>
42+
<location x="31.731955052292584" y="268.781312947055881" z="18.878674779371618"/>
4343
</instance>
4444
<instance id="2">
45-
<location x="53.196249421914075" y="144.47758109254687" z="46.851975572138628"/>
45+
<location x="-31.385048839781703" y="227.065309281460202" z="27.378023736986901"/>
4646
</instance>
4747
<instance id="3">
48-
<location x="-20.844985362062317" y="188.239068673352108" z="-57.809991974759043"/>
48+
<location x="-40.600760307931935" y="229.472569292038287" z="78.917420261573398"/>
4949
</instance>
5050
<instance id="4">
51-
<location x="41.000859853632619" y="279.306766456403295" z="35.048479751214437"/>
51+
<location x="-13.02971151186172" y="212.851427756228588" z="-90.612108771756311"/>
5252
</instance>
5353
</population>
5454
<projection id="pop_pre__TO__pop_post" presynapticPopulation="pop_pre" postsynapticPopulation="pop_post" synapse="syn__pop_pre__TO__pop_post">

‎NeuroML2/Inputs.net.nml‎

Lines changed: 2 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -2,8 +2,8 @@
22
<notes>
33
This NeuroML 2 file has been generated from:
44
PyNN v0.11.0
5-
libNeuroML v0.6.3
6-
pyNeuroML v1.3.7
5+
libNeuroML v0.6.6
6+
pyNeuroML v1.3.17
77
</notes>
88
<pulseGenerator id="DCSource_DCSource_0" delay="50.0ms" duration="350.0ms" amplitude="0.9nA"/>
99
<compoundInput id="ACSource_ACSource_1">

‎NeuroML2/LEMS_Sim_Inputs.xml‎

Lines changed: 2 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -3,8 +3,8 @@
33
<!--
44
This LEMS file has been generated from:
55
PyNN v0.11.0
6-
libNeuroML v0.6.3
7-
pyNeuroML v1.3.7
6+
libNeuroML v0.6.6
7+
pyNeuroML v1.3.17
88
-->
99

1010
<!-- Specify which component to run -->

‎NeuroML2/LEMS_Sim_PyNN_NeuroML2_Export.xml‎

Lines changed: 2 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -3,8 +3,8 @@
33
<!--
44
This LEMS file has been generated from:
55
PyNN v0.11.0
6-
libNeuroML v0.6.3
7-
pyNeuroML v1.3.7
6+
libNeuroML v0.6.6
7+
pyNeuroML v1.3.17
88
-->
99

1010
<!-- Specify which component to run -->

‎NeuroML2/Positions.net.nml.h5‎

32 Bytes
Binary file not shown.

‎NeuroML2/PyNN_NeuroML2_Export.net.nml‎

Lines changed: 2 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -2,8 +2,8 @@
22
<notes>
33
This NeuroML 2 file has been generated from:
44
PyNN v0.11.0
5-
libNeuroML v0.6.3
6-
pyNeuroML v1.3.7
5+
libNeuroML v0.6.6
6+
pyNeuroML v1.3.17
77
</notes>
88
<IF_curr_alpha id="IF_curr_alpha_pop_IF_curr_alpha" cm="1.0" i_offset="0.9" tau_syn_E="2.0" tau_syn_I="5.0" v_init="-65.0" tau_m="20.0" tau_refrac="10.0" v_reset="-62.0" v_rest="-65.0" v_thresh="-52.0"/>
99
<IF_curr_exp id="IF_curr_exp_pop_IF_curr_exp" cm="1.0" i_offset="1.0" tau_syn_E="2.0" tau_syn_I="5.0" v_init="-65.0" tau_m="20.0" tau_refrac="8.0" v_reset="-70.0" v_rest="-65.0" v_thresh="-50.0"/>

‎PyNN/LEMS_2007One_pynn.py‎

Lines changed: 3 additions & 3 deletions
Original file line numberDiff line numberDiff line change
@@ -9,9 +9,9 @@
99
1010
1111
This PyNN file has been generated by org.neuroml.export (see https://github.com/NeuroML/org.neuroml.export)
12-
org.neuroml.export v1.10.1
13-
org.neuroml.model v1.10.1
14-
jLEMS v0.11.1
12+
org.neuroml.export v1.11.0
13+
org.neuroml.model v1.11.0
14+
jLEMS v0.12.0
1515
1616
'''
1717
# Main PyNN script for: net1

‎PyNN/RS.mod‎

Lines changed: 3 additions & 3 deletions
Original file line numberDiff line numberDiff line change
@@ -3,9 +3,9 @@ TITLE Mod file for component: Component(id=RS type=izhikevich2007Cell)
33
COMMENT
44

55
This NEURON file has been generated by org.neuroml.export (see https://github.com/NeuroML/org.neuroml.export)
6-
org.neuroml.export v1.10.1
7-
org.neuroml.model v1.10.1
8-
jLEMS v0.11.1
6+
org.neuroml.export v1.11.0
7+
org.neuroml.model v1.11.0
8+
jLEMS v0.12.0
99

1010
ENDCOMMENT
1111

‎PyNN/RS_Iext.mod‎

Lines changed: 3 additions & 3 deletions
Original file line numberDiff line numberDiff line change
@@ -3,9 +3,9 @@ TITLE Mod file for component: Component(id=RS_Iext type=pulseGenerator)
33
COMMENT
44

55
This NEURON file has been generated by org.neuroml.export (see https://github.com/NeuroML/org.neuroml.export)
6-
org.neuroml.export v1.10.1
7-
org.neuroml.model v1.10.1
8-
jLEMS v0.11.1
6+
org.neuroml.export v1.11.0
7+
org.neuroml.model v1.11.0
8+
jLEMS v0.12.0
99

1010
ENDCOMMENT
1111

0 commit comments

Comments
 (0)