|
1 | 1 | <Lems> |
2 | | - |
| 2 | + |
3 | 3 | <!-- |
4 | 4 | This LEMS file has been generated from: |
5 | | - PyNN v0.10.1 |
6 | | - libNeuroML v0.5.5 |
7 | | - pyNeuroML v1.1.1 |
| 5 | + PyNN v0.11.0 |
| 6 | + libNeuroML v0.6.1 |
| 7 | + pyNeuroML v1.3.0 |
8 | 8 | --> |
9 | | - |
| 9 | + |
10 | 10 | <!-- Specify which component to run --> |
11 | 11 | <Target component="Sim_PyNN_NeuroML2_Export"/> |
12 | 12 |
|
13 | 13 | <!-- Include core NeuroML2 ComponentType definitions --> |
14 | 14 | <Include file="Cells.xml"/> |
15 | 15 | <Include file="Networks.xml"/> |
16 | 16 | <Include file="Simulation.xml"/> |
17 | | - |
| 17 | + |
18 | 18 | <Include file="PyNN.xml"/> |
19 | 19 | <Include file="PyNN_NeuroML2_Export.net.nml"/> |
20 | | - |
| 20 | + |
21 | 21 | <Simulation id="Sim_PyNN_NeuroML2_Export" length="500.0ms" step="0.005ms" target="PyNN_NeuroML2_Export" seed="12345"> <!-- Note seed: ensures same random numbers used every run --> |
22 | | - |
23 | 22 | <Display id="pop_IF_curr_alpha_v" title="pop_IF_curr_alpha v" timeScale="1ms" xmin="-50.0" xmax="550.0" ymin="-70" ymax="10"> |
24 | 23 | <Line id="pop_IF_curr_alpha v: cell 42" quantity="pop_IF_curr_alpha/0/IF_curr_alpha_pop_IF_curr_alpha/v" scale="1mV" color="#d54f33" timeScale="1ms"/> |
25 | 24 | <Line id="pop_IF_curr_alpha v: cell 43" quantity="pop_IF_curr_alpha/1/IF_curr_alpha_pop_IF_curr_alpha/v" scale="1mV" color="#0534e4" timeScale="1ms"/> |
26 | 25 | <Line id="pop_IF_curr_alpha v: cell 44" quantity="pop_IF_curr_alpha/2/IF_curr_alpha_pop_IF_curr_alpha/v" scale="1mV" color="#98e752" timeScale="1ms"/> |
27 | 26 | </Display> |
28 | | - |
| 27 | + |
29 | 28 | <Display id="pop_IF_curr_exp_v" title="pop_IF_curr_exp v" timeScale="1ms" xmin="-50.0" xmax="550.0" ymin="-70" ymax="10"> |
30 | 29 | <Line id="pop_IF_curr_exp v: cell 45" quantity="pop_IF_curr_exp/0/IF_curr_exp_pop_IF_curr_exp/v" scale="1mV" color="#bca074" timeScale="1ms"/> |
31 | 30 | </Display> |
32 | | - |
| 31 | + |
33 | 32 | <Display id="pop_IF_cond_alpha_v" title="pop_IF_cond_alpha v" timeScale="1ms" xmin="-50.0" xmax="550.0" ymin="-70" ymax="10"> |
34 | 33 | <Line id="pop_IF_cond_alpha v: cell 46" quantity="pop_IF_cond_alpha/0/IF_cond_alpha_pop_IF_cond_alpha/v" scale="1mV" color="#632794" timeScale="1ms"/> |
35 | 34 | </Display> |
36 | | - |
| 35 | + |
37 | 36 | <Display id="pop_IF_cond_exp_v" title="pop_IF_cond_exp v" timeScale="1ms" xmin="-50.0" xmax="550.0" ymin="-70" ymax="10"> |
38 | 37 | <Line id="pop_IF_cond_exp v: cell 48" quantity="pop_IF_cond_exp/1/IF_cond_exp_pop_IF_cond_exp/v" scale="1mV" color="#8a5d88" timeScale="1ms"/> |
39 | 38 | <Line id="pop_IF_cond_exp v: cell 49" quantity="pop_IF_cond_exp/2/IF_cond_exp_pop_IF_cond_exp/v" scale="1mV" color="#df5954" timeScale="1ms"/> |
40 | 39 | <Line id="pop_IF_cond_exp v: cell 47" quantity="pop_IF_cond_exp/0/IF_cond_exp_pop_IF_cond_exp/v" scale="1mV" color="#52c8bf" timeScale="1ms"/> |
41 | 40 | </Display> |
42 | | - |
| 41 | + |
43 | 42 | <Display id="pop_EIF_cond_exp_isfa_ista_v" title="pop_EIF_cond_exp_isfa_ista v" timeScale="1ms" xmin="-50.0" xmax="550.0" ymin="-70" ymax="10"> |
44 | 43 | <Line id="pop_EIF_cond_exp_isfa_ista v: cell 50" quantity="pop_EIF_cond_exp_isfa_ista/0/EIF_cond_exp_isfa_ista_pop_EIF_cond_exp_isfa_ista/v" scale="1mV" color="#bf0239" timeScale="1ms"/> |
45 | 44 | </Display> |
46 | | - |
| 45 | + |
47 | 46 | <Display id="pop_HH_cond_exp_v" title="pop_HH_cond_exp v" timeScale="1ms" xmin="-50.0" xmax="550.0" ymin="-70" ymax="10"> |
48 | 47 | <Line id="pop_HH_cond_exp v: cell 51" quantity="pop_HH_cond_exp/0/HH_cond_exp_pop_HH_cond_exp/v" scale="1mV" color="#3f9fe8" timeScale="1ms"/> |
49 | 48 | </Display> |
50 | | - |
| 49 | + |
51 | 50 | <Display id="pop_post1_v" title="pop_post1 v" timeScale="1ms" xmin="-50.0" xmax="550.0" ymin="-70" ymax="10"> |
52 | 51 | <Line id="pop_post1 v: cell 52" quantity="pop_post1/0/IF_cond_exp_pop_post1/v" scale="1mV" color="#dda9d2" timeScale="1ms"/> |
53 | 52 | </Display> |
54 | | - |
| 53 | + |
55 | 54 | <Display id="pop_post2_v" title="pop_post2 v" timeScale="1ms" xmin="-50.0" xmax="550.0" ymin="-70" ymax="10"> |
56 | 55 | <Line id="pop_post2 v: cell 53" quantity="pop_post2/0/IF_cond_alpha_pop_post2/v" scale="1mV" color="#85ad96" timeScale="1ms"/> |
57 | 56 | </Display> |
58 | | - |
| 57 | + |
59 | 58 | <OutputFile id="OF_pop_IF_curr_alpha_v" fileName="pop_IF_curr_alpha_v.dat"> |
60 | | - <OutputColumn id="pop_IF_curr_alpha_0_IF_curr_alpha_pop_IF_curr_alpha_v" quantity="pop_IF_curr_alpha/0/IF_curr_alpha_pop_IF_curr_alpha/v"/> |
61 | | - <OutputColumn id="pop_IF_curr_alpha_1_IF_curr_alpha_pop_IF_curr_alpha_v" quantity="pop_IF_curr_alpha/1/IF_curr_alpha_pop_IF_curr_alpha/v"/> |
62 | | - <OutputColumn id="pop_IF_curr_alpha_2_IF_curr_alpha_pop_IF_curr_alpha_v" quantity="pop_IF_curr_alpha/2/IF_curr_alpha_pop_IF_curr_alpha/v"/> |
| 59 | + <OutputColumn id="pop_IF_curr_alpha_0_IF_curr_alpha_pop_IF_curr_alpha_v" quantity="pop_IF_curr_alpha/0/IF_curr_alpha_pop_IF_curr_alpha/v"/> |
| 60 | + <OutputColumn id="pop_IF_curr_alpha_1_IF_curr_alpha_pop_IF_curr_alpha_v" quantity="pop_IF_curr_alpha/1/IF_curr_alpha_pop_IF_curr_alpha/v"/> |
| 61 | + <OutputColumn id="pop_IF_curr_alpha_2_IF_curr_alpha_pop_IF_curr_alpha_v" quantity="pop_IF_curr_alpha/2/IF_curr_alpha_pop_IF_curr_alpha/v"/> |
63 | 62 | </OutputFile> |
64 | | - |
| 63 | + |
65 | 64 | <OutputFile id="OF_pop_IF_curr_exp_v" fileName="pop_IF_curr_exp_v.dat"> |
66 | | - <OutputColumn id="pop_IF_curr_exp_0_IF_curr_exp_pop_IF_curr_exp_v" quantity="pop_IF_curr_exp/0/IF_curr_exp_pop_IF_curr_exp/v"/> |
| 65 | + <OutputColumn id="pop_IF_curr_exp_0_IF_curr_exp_pop_IF_curr_exp_v" quantity="pop_IF_curr_exp/0/IF_curr_exp_pop_IF_curr_exp/v"/> |
67 | 66 | </OutputFile> |
68 | | - |
| 67 | + |
69 | 68 | <OutputFile id="OF_pop_IF_cond_alpha_v" fileName="pop_IF_cond_alpha_v.dat"> |
70 | | - <OutputColumn id="pop_IF_cond_alpha_0_IF_cond_alpha_pop_IF_cond_alpha_v" quantity="pop_IF_cond_alpha/0/IF_cond_alpha_pop_IF_cond_alpha/v"/> |
| 69 | + <OutputColumn id="pop_IF_cond_alpha_0_IF_cond_alpha_pop_IF_cond_alpha_v" quantity="pop_IF_cond_alpha/0/IF_cond_alpha_pop_IF_cond_alpha/v"/> |
71 | 70 | </OutputFile> |
72 | | - |
| 71 | + |
73 | 72 | <OutputFile id="OF_pop_IF_cond_exp_v" fileName="pop_IF_cond_exp_v.dat"> |
74 | | - <OutputColumn id="pop_IF_cond_exp_1_IF_cond_exp_pop_IF_cond_exp_v" quantity="pop_IF_cond_exp/1/IF_cond_exp_pop_IF_cond_exp/v"/> |
75 | | - <OutputColumn id="pop_IF_cond_exp_2_IF_cond_exp_pop_IF_cond_exp_v" quantity="pop_IF_cond_exp/2/IF_cond_exp_pop_IF_cond_exp/v"/> |
76 | | - <OutputColumn id="pop_IF_cond_exp_0_IF_cond_exp_pop_IF_cond_exp_v" quantity="pop_IF_cond_exp/0/IF_cond_exp_pop_IF_cond_exp/v"/> |
| 73 | + <OutputColumn id="pop_IF_cond_exp_1_IF_cond_exp_pop_IF_cond_exp_v" quantity="pop_IF_cond_exp/1/IF_cond_exp_pop_IF_cond_exp/v"/> |
| 74 | + <OutputColumn id="pop_IF_cond_exp_2_IF_cond_exp_pop_IF_cond_exp_v" quantity="pop_IF_cond_exp/2/IF_cond_exp_pop_IF_cond_exp/v"/> |
| 75 | + <OutputColumn id="pop_IF_cond_exp_0_IF_cond_exp_pop_IF_cond_exp_v" quantity="pop_IF_cond_exp/0/IF_cond_exp_pop_IF_cond_exp/v"/> |
77 | 76 | </OutputFile> |
78 | | - |
| 77 | + |
79 | 78 | <OutputFile id="OF_pop_EIF_cond_exp_isfa_ista_v" fileName="pop_EIF_cond_exp_isfa_ista_v.dat"> |
80 | | - <OutputColumn id="pop_EIF_cond_exp_isfa_ista_0_EIF_cond_exp_isfa_ista_pop_EIF_cond_exp_isfa_ista_v" quantity="pop_EIF_cond_exp_isfa_ista/0/EIF_cond_exp_isfa_ista_pop_EIF_cond_exp_isfa_ista/v"/> |
| 79 | + <OutputColumn id="pop_EIF_cond_exp_isfa_ista_0_EIF_cond_exp_isfa_ista_pop_EIF_cond_exp_isfa_ista_v" quantity="pop_EIF_cond_exp_isfa_ista/0/EIF_cond_exp_isfa_ista_pop_EIF_cond_exp_isfa_ista/v"/> |
81 | 80 | </OutputFile> |
82 | | - |
| 81 | + |
83 | 82 | <OutputFile id="OF_pop_HH_cond_exp_v" fileName="pop_HH_cond_exp_v.dat"> |
84 | | - <OutputColumn id="pop_HH_cond_exp_0_HH_cond_exp_pop_HH_cond_exp_v" quantity="pop_HH_cond_exp/0/HH_cond_exp_pop_HH_cond_exp/v"/> |
| 83 | + <OutputColumn id="pop_HH_cond_exp_0_HH_cond_exp_pop_HH_cond_exp_v" quantity="pop_HH_cond_exp/0/HH_cond_exp_pop_HH_cond_exp/v"/> |
85 | 84 | </OutputFile> |
86 | | - |
| 85 | + |
87 | 86 | <OutputFile id="OF_pop_post1_v" fileName="pop_post1_v.dat"> |
88 | | - <OutputColumn id="pop_post1_0_IF_cond_exp_pop_post1_v" quantity="pop_post1/0/IF_cond_exp_pop_post1/v"/> |
| 87 | + <OutputColumn id="pop_post1_0_IF_cond_exp_pop_post1_v" quantity="pop_post1/0/IF_cond_exp_pop_post1/v"/> |
89 | 88 | </OutputFile> |
90 | | - |
| 89 | + |
91 | 90 | <OutputFile id="OF_pop_post2_v" fileName="pop_post2_v.dat"> |
92 | | - <OutputColumn id="pop_post2_0_IF_cond_alpha_pop_post2_v" quantity="pop_post2/0/IF_cond_alpha_pop_post2/v"/> |
| 91 | + <OutputColumn id="pop_post2_0_IF_cond_alpha_pop_post2_v" quantity="pop_post2/0/IF_cond_alpha_pop_post2/v"/> |
93 | 92 | </OutputFile> |
94 | | - |
| 93 | + |
95 | 94 | <EventOutputFile id="Spikes_file_pop_IF_curr_alpha" fileName="pop_IF_curr_alpha.spikes" format="TIME_ID"> |
96 | | - <EventSelection id="0" select="pop_IF_curr_alpha/0/IF_curr_alpha_pop_IF_curr_alpha" eventPort="spike"/> |
97 | | - <EventSelection id="1" select="pop_IF_curr_alpha/1/IF_curr_alpha_pop_IF_curr_alpha" eventPort="spike"/> |
98 | | - <EventSelection id="2" select="pop_IF_curr_alpha/2/IF_curr_alpha_pop_IF_curr_alpha" eventPort="spike"/> |
| 95 | + <EventSelection id="0" select="pop_IF_curr_alpha/0/IF_curr_alpha_pop_IF_curr_alpha" eventPort="spike"/> |
| 96 | + <EventSelection id="1" select="pop_IF_curr_alpha/1/IF_curr_alpha_pop_IF_curr_alpha" eventPort="spike"/> |
| 97 | + <EventSelection id="2" select="pop_IF_curr_alpha/2/IF_curr_alpha_pop_IF_curr_alpha" eventPort="spike"/> |
99 | 98 | </EventOutputFile> |
100 | | - |
| 99 | + |
101 | 100 | <EventOutputFile id="Spikes_file_pop_IF_cond_exp" fileName="pop_IF_cond_exp.spikes" format="TIME_ID"> |
102 | | - <EventSelection id="1" select="pop_IF_cond_exp/1/IF_cond_exp_pop_IF_cond_exp" eventPort="spike"/> |
103 | | - <EventSelection id="2" select="pop_IF_cond_exp/2/IF_cond_exp_pop_IF_cond_exp" eventPort="spike"/> |
104 | | - <EventSelection id="0" select="pop_IF_cond_exp/0/IF_cond_exp_pop_IF_cond_exp" eventPort="spike"/> |
| 101 | + <EventSelection id="1" select="pop_IF_cond_exp/1/IF_cond_exp_pop_IF_cond_exp" eventPort="spike"/> |
| 102 | + <EventSelection id="2" select="pop_IF_cond_exp/2/IF_cond_exp_pop_IF_cond_exp" eventPort="spike"/> |
| 103 | + <EventSelection id="0" select="pop_IF_cond_exp/0/IF_cond_exp_pop_IF_cond_exp" eventPort="spike"/> |
105 | 104 | </EventOutputFile> |
106 | | - |
| 105 | + |
107 | 106 | <EventOutputFile id="Spikes_file_pop_EIF_cond_exp_isfa_ista" fileName="pop_EIF_cond_exp_isfa_ista.spikes" format="TIME_ID"> |
108 | | - <EventSelection id="0" select="pop_EIF_cond_exp_isfa_ista/0/EIF_cond_exp_isfa_ista_pop_EIF_cond_exp_isfa_ista" eventPort="spike"/> |
| 107 | + <EventSelection id="0" select="pop_EIF_cond_exp_isfa_ista/0/EIF_cond_exp_isfa_ista_pop_EIF_cond_exp_isfa_ista" eventPort="spike"/> |
109 | 108 | </EventOutputFile> |
110 | | - |
| 109 | + |
111 | 110 | </Simulation> |
112 | 111 |
|
113 | 112 | </Lems> |
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