Downgrade conversion failure to a warning

Author: arteymix

src/ubic/basecode/ontology/jena/AbstractOntologyService.java

@@ -400,7 +400,7 @@ public Collection<OntologyResource> findResources( String searchString, boolean
                                 return ( OntologyResource ) null;
                             }
                         } catch ( ConversionException e ) {
-                            log.error( "Conversion failed for " + r, e );
+                            log.warn( "Conversion failed for " + r, e );
                             return null;
                         }
                     } )

src/ubic/basecode/ontology/jena/IndexerSelector.java

@@ -113,7 +113,7 @@ public boolean test( Statement s ) {
             try {
                 retain = wantedForIndexing.contains( s.getObject().as( Property.class ) );
             } catch ( ConversionException e ) {
-                log.error( "Conversion failed for " + s.getObject(), e );
+                log.warn( "Conversion failed for " + s.getObject(), e );
             }
         }
 

src/ubic/basecode/ontology/jena/JenaUtils.java

@@ -47,7 +47,7 @@ private static Collection<OntClass> getParentsInternal( OntModel model, Collecti
                     try {
                         return t.as( OntClass.class );
                     } catch ( ConversionException e ) {
-                        log.error( "Conversion failed for " + t, e );
+                        log.warn( "Conversion failed for " + t, e );
                         return null;
                     }
                 } )
@@ -117,7 +117,7 @@ public static Collection<OntClass> getChildrenInternal( OntModel model, Collecti
                     try {
                         return t.as( OntClass.class );
                     } catch ( ConversionException e ) {
-                        log.error( "Conversion failed for " + t, e );
+                        log.warn( "Conversion failed for " + t, e );
                         return null;
                     }
                 } )
@@ -153,7 +153,7 @@ public static Collection<OntClass> getChildrenInternal( OntModel model, Collecti
                             try {
                                 return r2.as( OntClass.class );
                             } catch ( ConversionException e ) {
-                                log.error( "Conversion failed for " + r2, e );
+                                log.warn( "Conversion failed for " + r2, e );
                                 return null;
                             }
                         } )

src/ubic/basecode/ontology/jena/OntologySearch.java

@@ -187,7 +187,7 @@ private <U extends Resource> SearchResult<U> as( Class<U> clazz ) {
             try {
                 return new SearchResult<>( docId, result.as( clazz ), score );
             } catch ( ConversionException e ) {
-                log.error( "Conversion failed for " + result, e );
+                log.warn( "Conversion failed for " + result, e );
                 return null;
             }
         }

src/ubic/basecode/ontology/jena/OntologyTermImpl.java

@@ -96,7 +96,7 @@ public Collection<AnnotationProperty> getAnnotations() {
                         annots.add( new AnnotationPropertyImpl( p, n ) );
                     }
                 } catch ( ConversionException e ) {
-                    log.error( "Conversion failed for " + state.getPredicate(), e );
+                    log.warn( "Conversion failed for " + state.getPredicate(), e );
                 }
             }
         }