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delete now unused order_blocks command
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blocksequence/utils/commands.py

Lines changed: 0 additions & 42 deletions
Original file line numberDiff line numberDiff line change
@@ -87,48 +87,6 @@ def get_node_count(g):
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logger.debug('getting node count for graph')
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return len(g.nodes())
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@click.command()
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@click.argument('pid', envvar='SEQ_PARENT_UID')
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@click.argument('cid', envvar='SEQ_CHILD_UID')
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@click.pass_context
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def order_blocks(ctx, pid, cid):
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"""Calculate the block ordering based on the edge sequence."""
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logger.debug('order_blocks started')
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# sqlalchemy setup
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meta = MetaData()
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# pull the edge sequence out of the database
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logger.debug("Reading from edge_sequence table")
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edge_table = Table('edge_sequence', meta, autoload=True, autoload_with=ctx.obj['dest_db'])
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edge_select = select([edge_table])
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edge_sequence = pd.read_sql(edge_select, con=ctx.obj['dest_db'])
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# calculate the block order
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logger.debug("Calculating the block order")
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edge_sequence = edge_sequence.groupby(pid, sort=True).apply(sub_block_order, {'key':cid})
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# calculate the edge order within the blocks
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logger.debug("Calculating edge order")
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edge_sequence['edge_order'] = edge_sequence.groupby([pid, cid], sort=True).cumcount()+1
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# calculate the chain ID
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logger.debug("Calculating chain ID field")
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edge_sequence['chain_id'] = np.where(edge_sequence['edge_order'] == 1, 1, 0)
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output_table_name = 'ordered_sequence'
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logger.debug("Saving block order to %s table", output_table_name)
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edge_sequence.to_sql(output_table_name, con=ctx.obj['dest_db'])
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logger.debug('order_blocks ended')
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def sub_block_order(data, key='lb_uid'):
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"""Takes a DataFrame grouped by a parent geography and creates an ID number for the order in which they appear."""
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grp = data.groupby(key)
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data['block_order'] = grp.ngroup()+1
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return data
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@click.command()
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@click.argument('pgeo', envvar='SEQ_PARENT_LAYER')

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