module for ilastik integration

[hackermd]

Creation of a jterator module for pixel based classification à la CellProfiler classifypixels module. The idea is to train a classifier with the Ilastik GUI, save the output (either the classifier as ilastik project HDF5 file or a probability map as an image file) and then apply the output to images in a jterator pipeline. To this end, we need to create a Python module that implements functions to call ilastik independent of CP2.

[SaadiaIftikhar]

https://github.com/pelkmanslab/iBRAIN_UZH/wiki/Installing-Ilastik-on-linux-server