There is currently a bug with the way snakemake interacts with slurm and singularity. I've added to an issue on the snakemake repo: https://github.com/snakemake/snakemake/issues/2808
There is currently a bug with the way snakemake interacts with slurm and singularity.
I've added to an issue on the snakemake repo:
snakemake/snakemake#2808