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Merge pull request #182 from WengLab-InformaticsResearch/replace_400_errors
Update test cases where 400s were previously expected
2 parents 5b8bf13 + 204c6d5 commit ddac0fa

1 file changed

Lines changed: 39 additions & 7 deletions

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test_cohd_trapi.py

Lines changed: 39 additions & 7 deletions
Original file line numberDiff line numberDiff line change
@@ -430,10 +430,19 @@ def test_translator_query_unsupported_predicate():
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print(j.dumps(query))
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resp = requests.post(url, json=query, timeout=300)
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# Expect HTTP 400 status response
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assert resp.status_code == 400, 'Expected an HTTP 400 status response code' \
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# Expect HTTP 200 status response
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assert resp.status_code == 200, 'Expected an HTTP 200 status response code' \
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f'Received {resp.status_code}: {resp.text}'
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# Use the Reasoner Validator Python package to validate against Reasoner Standard API
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json = resp.json()
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_validate_trapi_response(json)
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# There should be 0 results or null
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results = json['message']['results']
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print(results)
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assert results is None or len(results) == 0, 'Found results when expecting none' + _print_trapi_log(json)
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def test_translator_query_bad_predicate():
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""" Check the TRAPI endpoint when using an bad predicate (biolink:correlated). Expect COHD to return a 400 """
@@ -473,9 +482,18 @@ def test_translator_query_bad_predicate():
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resp = requests.post(url, json=query, timeout=300)
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# Expect HTTP 200 status response
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assert resp.status_code == 400, 'Expected an HTTP 400 status response code' \
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assert resp.status_code == 200, 'Expected an HTTP 200 status response code' \
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f'Received {resp.status_code}: {resp.text}'
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# Use the Reasoner Validator Python package to validate against Reasoner Standard API
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json = resp.json()
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_validate_trapi_response(json)
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# There should be 0 results or null
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results = json['message']['results']
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print(results)
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assert results is None or len(results) == 0, 'Found results when expecting none' + _print_trapi_log(json)
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def test_translator_query_q1_multiple_ids():
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""" Check the TRAPI endpoint when using multiple IDs in the subject node. Expect COHD to return 3+ results """
@@ -960,16 +978,30 @@ def test_translator_workflows():
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# Test with bad workflows: unsupported operation (overlay)
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j_query['workflow'] = [{'id': 'overlay'}]
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resp = requests.post(url, json=j_query, timeout=300)
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# Expect HTTP 400 status response
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assert resp.status_code == 400, 'Expected an HTTP 400 status response code' \
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# Expect HTTP 200 status response
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assert resp.status_code == 200, 'Expected an HTTP 200 status response code' \
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f'Received {resp.status_code}: {resp.text}'
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# Use the Reasoner Validator Python package to validate against Reasoner Standard API
985+
json = resp.json()
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_validate_trapi_response(json)
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# There should be 0 results or null
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results = json['message']['results']
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print(results)
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assert results is None or len(results) == 0, 'Found results when expecting none' + _print_trapi_log(json)
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# Test with bad workflows: multiple lookups
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j_query['workflow'] = [{'id': 'lookup'}, {'id': 'lookup'}]
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resp = requests.post(url, json=j_query, timeout=300)
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# Expect HTTP 400 status response
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assert resp.status_code == 400, 'Expected an HTTP 400 status response code' \
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# Expect HTTP 200 status response
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assert resp.status_code == 200, 'Expected an HTTP 200 status response code' \
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f'Received {resp.status_code}: {resp.text}'
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# Use the Reasoner Validator Python package to validate against Reasoner Standard API
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json = resp.json()
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_validate_trapi_response(json)
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# There should be 0 results or null
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results = json['message']['results']
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print(results)
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assert results is None or len(results) == 0, 'Found results when expecting none' + _print_trapi_log(json)
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def test_translator_meta_knowledge_graph():

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