pyproject.toml

[build-system]
requires = ["setuptools>=61.0", "wheel"]
build-backend = "setuptools.build_meta"

[project]
name = "treeprofiler"
description = "A command line tool to annotate and visualize metadata in phylogenetic tree."
version = "2.0.4"
authors = [
  { name="Ziqi Deng", email="dengziqi1234@gmail.com" },
  { name="Jaime Huerta-Cepas", email="jhcepas@gmail.com" },
]
readme = "README.md"
license = { file="LICENSE" }
requires-python = ">=3.10"
classifiers = [
  "Programming Language :: Python :: 3",
  "License :: OSI Approved :: GNU General Public License v3 or later (GPLv3+)",
  "Development Status :: 6 - Mature",
  "Environment :: Console",
  "Environment :: X11 Applications :: Qt",
  "Intended Audience :: Developers",
  "Intended Audience :: Other Audience",
  "Intended Audience :: Science/Research",
  "Natural Language :: English",
  "Operating System :: MacOS",
  "Operating System :: Microsoft :: Windows",
  "Operating System :: POSIX :: Linux",
  "Topic :: Scientific/Engineering :: Bio-Informatics",
  "Topic :: Scientific/Engineering :: Visualization",
  "Topic :: Software Development :: Libraries :: Python Modules",
]

dependencies = [
  "numpy>=1.25,<2",
  "biopython>=1.8",
  "selenium>=4.24.0",
  "scipy>=1.8.0",
  "matplotlib>=3.4.0",
  "pymc>=5.0.0",
  "pyvirtualdisplay",
  "webdriver_manager>=4.0",
]

[project.urls]
"Homepage" = "http://dengzq1234.github.io/TreeProfiler/"

[project.scripts]
treeprofiler = "treeprofiler:main"
treeprofiler-desktop = "treeprofiler.app:start_server"

[tool.setuptools.packages.find]
where = ["."]

[tool.setuptools]
include-package-data = true

[tool.setuptools.package-data]
treeprofiler = [
  "examples/**/*",
  "layouts/pfam2color.json",
  "layouts/smart2color.json"
]