diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
index d6f784c422..be687c5969 100644
--- a/.pre-commit-config.yaml
+++ b/.pre-commit-config.yaml
@@ -23,14 +23,14 @@ repos:
       - id: check-toml
   # Python
   - repo: https://github.com/PyCQA/isort
-    rev: 9.0.0b1
+    rev: 9.0.1
     hooks:
       - id: isort
         files: \.py$
         exclude: ^source/3rdparty
   - repo: https://github.com/astral-sh/ruff-pre-commit
     # Ruff version.
-    rev: v0.16.0
+    rev: v0.16.5
     hooks:
       - id: ruff
         args: ["--fix"]
@@ -62,7 +62,7 @@ repos:
           - mdformat-gfm-alerts==2.0.0
   # C++
   - repo: https://github.com/pre-commit/mirrors-clang-format
-    rev: v22.1.8
+    rev: v23.1.0
     hooks:
       - id: clang-format
         exclude: ^(source/3rdparty|source/lib/src/gpu/cudart/.+\.inc|.+\.ipynb$|source/tests/infer/.+\.json$)
@@ -156,7 +156,7 @@ repos:
         exclude: .pre-commit-config.yaml|source/lmp
   # customized pylint rules
   - repo: https://github.com/pylint-dev/pylint/
-    rev: v4.0.6
+    rev: v4.0.8
     hooks:
       - id: pylint
         entry: env PYTHONPATH=source/checker pylint