bmdx/NAMESPACE at main · fhaive/bmdx · GitHub

1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
# Generated by roxygen2: do not edit by hand

export(add_average_models)
export(aggregate_rows_time)
export(apply_tpod_methods)
export(bmr_factor)
export(build_models)
export(check_edges_in_graph)
export(cluster_genes_pairs)
export(compute_deviations)
export(compute_gene_frequencies)
export(compute_model_statistics)
export(create_data_structure)
export(dose_response_analysis)
export(ecdf_plots)
export(filter_antimode)
export(filter_df)
export(filter_df_no)
export(filter_existing_nodes)
export(filter_pval)
export(filter_pval_th)
export(filter_tpod_acc)
export(find_best_model_aic)
export(fitting_list)
export(gene_pairs_analysis)
export(gene_pairs_comparison)
export(get_mode_antimode)
export(get_model_stats)
export(inner.check.model)
export(is_strictly_monotonic)
export(kneedle)
export(load_ppi_data)
export(make_d3_network)
export(make_empty_plot)
export(model_filtering)
export(perform_anova)
export(perform_differential_expression_analysis_filtering)
export(perform_trend_test)
export(plot_BMD_tPOD_density)
export(plot_bmd_bmdl_bmdu_set_of_genes)
export(plot_bmdx)
export(plot_filtering_pie_chart)
export(plot_gene_pairs)
export(plot_histogram)
export(plot_pie_chart)
export(plot_scatter)
export(point_of_departure)
export(pval_adjust)
export(read_excel_allsheets)
export(scale_numbers)
export(select_optimal_models)
export(tpod_accumulation)
export(tpod_computation)
export(tpod_first_mode)
export(tpod_lowest)
export(tpod_mean)
export(tpod_percentile)
export(tpod_plot)
export(upset_plot)
import(dplyr)
import(ggplot2)
importFrom(stats,quantile)