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Clean up README and remove empty directories
- Remove references to empty/unused directories from structure - Remove background/, vocabulary/, tests/, examples/iSamples/, examples/script/ - Add Related iSamples Repositories section - Add Sample metadata repository parquet URLs Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
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README.md

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├── src/
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│ └── schemas/ # LinkML schema definitions
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│ └── isamples_core.yaml
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├── background/ # Diagrams and information about existing models
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│ ├── DataCite/
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│ ├── ESS-DIVE/
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│ ├── GEOME-TDWG/
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│ ├── GeoScience/
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│ ├── ODM-CUAHSI/
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│ └── OpenContext-Archae-anthro/
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├── examples/ # Example metadata documents from different systems
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│ ├── APItesting/
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│ ├── GEOME/
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│ ├── geoJSON/
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│ ├── iSamples/
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│ ├── OpenContext/
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│ ├── script/
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│ ├── SESAR/
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│ └── smithonsonian/
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├── vocabulary/ # Vocabulary-related files
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├── tools/ # Modified docgen tool and templates for Quarto
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├── quarto/ # Quarto configuration files
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├── build/ # Build output (intermediate docs)
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│ └── docs/ # Generated markdown documentation
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├── tests/ # Test files
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└── notes/ # Development notes
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```
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```bash
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docker run -a stdin -a stdout -i -t -v `pwd`:/work isamples_linkml
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```
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## Related iSamples Repositories
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| Repo | Purpose | Start Here |
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|------|---------|------------|
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| [isamplesorg-metadata](https://github.com/isamplesorg/metadata) | Schema definition | `src/schemas/isamples_core.yaml` |
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| [isamples-python](https://github.com/isamplesorg/examples) | Jupyter examples | `examples/basic/isamples_explorer.ipynb` |
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| [isamplesorg.github.io](https://isamplesorg.github.io/) | Browser tutorials | `tutorials/isamples_explorer.qmd` |
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| [vocabularies](https://github.com/isamplesorg/vocabularies) | SKOS terms | Material types, context categories |
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# Sample metadata repository (parquet format)
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## Wide format (primary) - 280MB, 20M rows
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WIDE_URL = "https://pub-a18234d962364c22a50c787b7ca09fa5.r2.dev/isamples_202601_wide.parquet"
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## Narrow format (advanced) - 850MB, 106M rows
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NARROW_URL = "https://pub-a18234d962364c22a50c787b7ca09fa5.r2.dev/isamples_202512_narrow.parquet"

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