Hello,
Thanks for your great tool! I am using fgwas to calculate null correlatoins for gwas-pw and I ran into following error: "current segment is 70755198 73174848, position is 7"
It seems errors related to bed file, but I couldn't pinpoint the source of this error. I made sure all the SNPs were within the rages of segments (in the bed file) and ordered chromosome number and position appropriately. In addition, fgwas ran well for all the summary gwas stats I have other than this particular file.
Could somebody help me solve this issue?
Thank you very much in advance!
Hello,
Thanks for your great tool! I am using fgwas to calculate null correlatoins for gwas-pw and I ran into following error: "current segment is 70755198 73174848, position is 7"
It seems errors related to bed file, but I couldn't pinpoint the source of this error. I made sure all the SNPs were within the rages of segments (in the bed file) and ordered chromosome number and position appropriately. In addition, fgwas ran well for all the summary gwas stats I have other than this particular file.
Could somebody help me solve this issue?
Thank you very much in advance!