before merge j-dev-brightestPath

Author: cudmore

src/pymapmanager/annotations/baseAnnotationsCore.py

@@ -699,6 +699,10 @@ def _buildSummaryDf(self) -> pd.DataFrame:
             summaryDf['Pivot Distance'] = segmentDf['pivotDistance']
             summaryDf['Color'] = segmentDf['color']
 
+        except (KeyError) as e:
+            logger.error(e)
+            logger.error(f'available keys are: {segmentDf.keys()}')
+            
         except (AttributeError) as e:
             # when no segments
             logger.warning('NO SEGMENTS !!!!!!!!')

src/pymapmanager/interface2/pyMapManagerApp2.py

@@ -262,6 +262,8 @@ def openWidgetFromPath(self, path : str) -> Union[stackWidget2, mapWidget]:
 
             numTimepoints = _timeSeriesCore.numSessions
 
+            logger.info(f'numtimepoints:{numTimepoints}')
+            
             if numTimepoints == 1:
                 # single timepoint map
                 _aWidget = stackWidget2(timeseriescore=_timeSeriesCore, timepoint=0)

src/pymapmanager/interface2/runInterfaceBob.py

@@ -21,26 +21,29 @@ def run():
     # a single timepoint tif file (import)
     path = mapmanagercore.data.getTiffChannel_1()
 
-    # path = mapmanagercore.data.getSingleTimepointMap()
+    path = mapmanagercore.data.getSingleTimepointMap()
 
     # a mmap with multiple timepoints, connects segments and spines
     # path = '/Users/cudmore/Desktop/multi_timepoint_map_seg_spine_connected.mmap'
     # path = mapmanagercore.data.getMultiTimepointMap()
 
     # path = '/Users/cudmore/Desktop/olsen_example.mmap'
-    path = '/Users/cudmore/Desktop/example_nd2.mmap'
-    path = '/Users/cudmore/Desktop/example_nd2.mmap.zip'
-    path = '/Users/cudmore/Sites/MapManagerCore-Data/data/Animal_145_Slice_1_Right.mmap.zip'
-    path = '/Users/cudmore/Desktop/Animal_145_Slice_1_Right.mmap.zip'
+    # path = '/Users/cudmore/Desktop/example_nd2.mmap'
+    # path = '/Users/cudmore/Desktop/example_nd2.mmap.zip'
+    # path = '/Users/cudmore/Sites/MapManagerCore-Data/data/Animal_145_Slice_1_Right.mmap.zip'
+    # path = '/Users/cudmore/Desktop/Animal_145_Slice_1_Right.mmap.zip'
 
-    from mapmanagercore.data import getNd2Channel_1, getSingleTimepointMap_nd2, getTiffChannel_1
-    path = getNd2Channel_1()
+    # from mapmanagercore.data import getNd2Channel_1, getSingleTimepointMap_nd2, getTiffChannel_1
+    # path = getNd2Channel_1()
     # path = getSingleTimepointMap_nd2()
 
-    path = '/Users/cudmore/Desktop/Animal_145_Slice_1_Right.mmap.zip'
+    # Olson data
+    # path = '/Users/cudmore/Desktop/Animal_145_Slice_1_Right.mmap.zip'
 
     # path = getTiffChannel_1()
 
+    path = '/Users/cudmore/Desktop/single_timepoint_20250108.mmap'
+    
     app = PyMapManagerApp(sys.argv)
     # mw will be map widget if path has multiple timepoints, otherwise mw is a stackwidget2