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dic and crr hapi servers for testing, dic-fhi-store demo bundle
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‎codex-process-data-transfer/src/test/resources/fhir/Bundle/dic_fhir_store_demo.json‎

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{
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"resourceType": "Bundle",
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"type": "transaction",
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"entry": [{
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"fullUrl": "urn:uuid:180200e1-91c2-48b0-830d-b93b5231f030",
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"resource": {
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"resourceType": "Patient",
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"meta": {
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"profile": ["https://www.netzwerk-universitaetsmedizin.de/fhir/StructureDefinition/Patient"]
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},
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"extension": [{
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"url": "https://www.netzwerk-universitaetsmedizin.de/fhir/StructureDefinition/ethnic-group",
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"valueCoding": {
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"system": "http://snomed.info/sct",
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"code": "186019001",
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"display": "Other ethnic, mixed origin"
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}
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}, {
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"url": "https://www.netzwerk-universitaetsmedizin.de/fhir/StructureDefinition/age",
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"extension": [{
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"url": "dateTimeOfDocumentation",
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"valueDateTime": "2020-10-01"
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}, {
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"url": "age",
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"valueAge": {
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"value": 67,
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"unit": "years",
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"system": "http://unitsofmeasure.org",
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"code": "a"
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}
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}
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]
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}
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],
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"identifier": [{
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"system": "http://netzwerk-universitaetsmedizin.de/fhir/NamingSystem/dic-pseudonym",
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"value": "source/original"
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}
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],
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"birthDate": "1953-09-30"
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},
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"request": {
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"method": "PUT",
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"url": "Patient?identifier=http://netzwerk-universitaetsmedizin.de/fhir/NamingSystem/dic-pseudonym|source/original"
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}
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}, {
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"fullUrl": "urn:uuid:612d9577-3626-4a10-9543-50ad0b3b44a0",
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"resource": {
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"resourceType": "Condition",
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"meta": {
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"profile": ["https://www.netzwerk-universitaetsmedizin.de/fhir/StructureDefinition/chronic-lung-diseases"]
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},
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"clinicalStatus": {
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"coding": [{
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"system": "http://terminology.hl7.org/CodeSystem/condition-clinical",
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"code": "active",
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"display": "Active"
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}
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]
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},
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"verificationStatus": {
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"coding": [{
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"system": "http://terminology.hl7.org/CodeSystem/condition-ver-status",
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"code": "confirmed",
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"display": "Confirmed"
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}, {
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"system": "http://snomed.info/sct",
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"code": "410605003",
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"display": "Confirmed present (qualifier value)"
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}
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]
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},
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"category": [{
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"coding": [{
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"system": "http://snomed.info/sct",
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"code": "418112009",
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"display": "Pulmonary medicine"
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}
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]
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}
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],
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"code": {
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"coding": [{
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"system": "http://snomed.info/sct",
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"code": "413839001",
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"display": "Chronic lung disease"
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}
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]
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},
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"subject": {
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"reference": "urn:uuid:180200e1-91c2-48b0-830d-b93b5231f030"
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},
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"recordedDate": "2020-11-10T15:50:41.000+01:00"
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},
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"request": {
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"method": "PUT",
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"url": "Condition?_profile=https://www.netzwerk-universitaetsmedizin.de/fhir/StructureDefinition/chronic-lung-diseases&recorded-date=2020-11-10T15:50:41.000+01:00"
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}
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}, {
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"fullUrl": "urn:uuid:c6bb56d7-c6a2-4a72-8a1a-cd1af418d1c4",
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"resource": {
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"resourceType": "Observation",
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"meta": {
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"profile": ["https://www.netzwerk-universitaetsmedizin.de/fhir/StructureDefinition/sars-cov-2-rt-pcr"]
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},
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"identifier": [{
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"type": {
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"coding": [{
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"system": "http://terminology.hl7.org/CodeSystem/v2-0203",
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"code": "OBI"
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}
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]
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}
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}
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],
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"status": "final",
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"category": [{
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"coding": [{
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"system": "http://loinc.org",
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"code": "26436-6"
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}, {
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"system": "http://terminology.hl7.org/CodeSystem/observation-category",
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"code": "laboratory"
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}
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]
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}
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],
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"code": {
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"coding": [{
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"system": "http://loinc.org",
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"code": "94500-6",
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"display": "SARS-CoV-2 (COVID-19) RNA [Presence] in Respiratory specimen by NAA with probe detection"
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}
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],
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"text": "SARS-CoV-2-RNA (PCR)"
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},
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"subject": {
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"reference": "urn:uuid:180200e1-91c2-48b0-830d-b93b5231f030"
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},
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"effectiveDateTime": "2020-11-10T15:50:41.000+01:00",
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"valueCodeableConcept": {
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"coding": [{
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"system": "http://snomed.info/sct",
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"code": "260373001",
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"display": "Detected (qualifier value)"
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}
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],
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"text": "SARS-CoV-2-RNA positiv"
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}
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},
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"request": {
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"method": "PUT",
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"url": "Observation?_profile=https://www.netzwerk-universitaetsmedizin.de/fhir/StructureDefinition/sars-cov-2-rt-pcr&date=2020-11-10T15:50:41.000+01:00"
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}
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}
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]
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}

‎codex-processes-ap1-docker-test-setup/crr/bpe/app/conf/config.properties‎

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#org.highmed.dsf.bpe.mpi.pdq.assigningAuthority.namespaceId=
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#org.highmed.dsf.bpe.mpi.pdq.assigningAuthority.universalId=
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org.highmed.dsf.bpe.process.excluded=dataTrigger/0.2.0,dataSend/0.2.0,dataTranslate/0.2.0
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org.highmed.dsf.bpe.process.excluded=dataTrigger/0.2.1,dataSend/0.2.1,dataTranslate/0.2.1
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#org.highmed.dsf.bpe.process.retired=
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#org.highmed.dsf.bpe.process_plugin_directroy=process
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de.netzwerk_universitaetsmedizin.codex.crr.privateKey=conf/crr_private-key.pem
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de.netzwerk_universitaetsmedizin.codex.crr.privateKey=conf/crr_private-key.pem
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de.netzwerk_universitaetsmedizin.codex.fhir.serverBase=http://crr-fhir-store:8080/fhir

‎codex-processes-ap1-docker-test-setup/dic/bpe/app/conf/config.properties‎

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#org.highmed.dsf.bpe.mpi.pdq.assigningAuthority.namespaceId=
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#org.highmed.dsf.bpe.mpi.pdq.assigningAuthority.universalId=
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org.highmed.dsf.bpe.process.excluded=dataTranslate/0.2.0,dataReceive/0.2.0
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org.highmed.dsf.bpe.process.excluded=dataTranslate/0.2.1,dataReceive/0.2.1
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#org.highmed.dsf.bpe.process.retired=
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#org.highmed.dsf.bpe.process_plugin_directroy=process
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de.netzwerk_universitaetsmedizin.codex.crr.publicKey=conf/crr_public-key.pem
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de.netzwerk_universitaetsmedizin.codex.geccoTransferHubIdentifierValue=Test_GTH
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de.netzwerk_universitaetsmedizin.codex.geccoTransferHubIdentifierValue=Test_GTH
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de.netzwerk_universitaetsmedizin.codex.fhir.serverBase=http://dic-fhir-store:8080/fhir

‎codex-processes-ap1-docker-test-setup/docker-compose.yml‎

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depends_on:
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- dic-bpe-db
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- dic-fhir-proxy
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- dic-fhir-store
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dic-bpe-db:
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image: postgres:13
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restart: on-failure
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target: /var/lib/postgresql/data
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secrets:
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- dic-bpe-postgres_password
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dic-fhir-store:
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image: hapiproject/hapi:v5.2.0
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restart: on-failure
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ports:
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- 127.0.0.1:8003:8080
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networks:
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- dic-bpe-backend
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gth-fhir-proxy:
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depends_on:
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- crr-bpe-db
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- crr-fhir-proxy
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- crr-fhir-store
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crr-bpe-db:
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image: postgres:13
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restart: on-failure
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target: /var/lib/postgresql/data
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secrets:
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- crr-bpe-postgres_password
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crr-fhir-store:
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image: hapiproject/hapi:v5.2.0
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restart: on-failure
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ports:
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- 127.0.0.1:8005:8080
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networks:
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- crr-bpe-backend
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secrets:
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dic-fhir-postgres_password:
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file: ./dic/fhir/db/conf/postgres_password

‎codex-processes-ap1-docker-test-setup/gth/bpe/app/conf/config.properties‎

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#org.highmed.dsf.bpe.mpi.pdq.assigningAuthority.namespaceId=
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#org.highmed.dsf.bpe.mpi.pdq.assigningAuthority.universalId=
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org.highmed.dsf.bpe.process.excluded=dataTrigger/0.2.0,dataSend/0.2.0,dataReceive/0.2.0
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org.highmed.dsf.bpe.process.excluded=dataTrigger/0.2.1,dataSend/0.2.1,dataReceive/0.2.1
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#org.highmed.dsf.bpe.process.retired=
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#org.highmed.dsf.bpe.process_plugin_directroy=process
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