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    20 repositories

    • CengenApp

      Public
      CSS
      •1•4•2•0•Updated Jan 10, 2026Jan 10, 2026

    • CeNGEN_integrated_analysis_2024

      Public
      Github repo for the 2024 CeNGEN manuscript detailing our work analyzing gene expression data from FACS sorted C. elegans neurons, integrating data from both bul…
      transcriptomicseleganstranscriptomics-data-integration
      transcriptomicseleganstranscriptomics-data-integration
      R
      •
      MIT License
      •0•0•0•0•Updated Jul 14, 2025Jul 14, 2025

    • regression_exon_skipping

      Public
      R
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Feb 13, 2025Feb 13, 2025

    • suppa_events

      Public
      R
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Feb 6, 2025Feb 6, 2025

    • stringtie_quantif

      Public
      HTML
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jan 23, 2025Jan 23, 2025

    • quantif_exon_skipping

      Public
      HTML
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Nov 7, 2024Nov 7, 2024

    • reanalysis_tissue

      Public
      Shell
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Nov 7, 2024Nov 7, 2024

    • isoform_compare

      Public
      R
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Nov 7, 2024Nov 7, 2024

    • das_by_neuron

      Public
      R
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Nov 7, 2024Nov 7, 2024

    • splicing_browser

      Public
      R
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Nov 7, 2024Nov 7, 2024

    • novel_junctions

      Public
      HTML
      •
      GNU General Public License v3.0
      •0•1•0•0•Updated Nov 5, 2024Nov 5, 2024

    • bulk_align

      Public
      Alignment pipeline
      Nextflow
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Nov 5, 2024Nov 5, 2024

    • majiq

      Public
      R
      •0•0•0•0•Updated Oct 9, 2024Oct 9, 2024

    • cnt_unc40_dfct

      Public
      R
      •0•0•0•0•Updated Oct 9, 2024Oct 9, 2024

    • projectNPN

      Public
      projection and reverse transformation for nonparanormal and Zscore transformations
      R
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Mar 28, 2024Mar 28, 2024

    • CeNGEN_integrated_analysis_biorxiv_code

      Public
      code used analyzing data for the April 2022 CeNGEN biorxiv paper
      R
      •
      MIT License
      •0•0•0•0•Updated Apr 8, 2022Apr 8, 2022

    • connectivity_analysis

      Public
      Hypothesis testing the genetic basis of the connectome
      MATLAB
      •
      MIT License
      •0•0•0•0•Updated Oct 1, 2021Oct 1, 2021

    • Thresholding_sc

      Public
      Selecting a threshold for calling gene expression in single-cell data
      R
      •0•1•0•0•Updated Dec 17, 2020Dec 17, 2020

    • splicing

      Public
      Splicing analysis with SplAdder
      R
      •0•0•0•0•Updated Dec 16, 2020Dec 16, 2020

    • Initial_single_cell_analysis

      Public
      Cell calling and background correction on individual single-cell experiments
      R
      •0•0•0•0•Updated Dec 16, 2020Dec 16, 2020
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