Repositories list

• r-ofhelper

  Public
  Utility R package for the Our Future Health DNAnexus Trusted Research Environment

  R

  •

  GNU General Public License v3.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated Mar 27, 2026Mar 27, 2026

• smap

  Public
  Summary Statistics Manipulation and Processing

  R

  •

  GNU General Public License v3.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated Mar 26, 2026Mar 26, 2026

• obesity-prognosis

  Public
  This repository contains the analysis code accompanying the paper (XXX) (unpublished).

  R

  •

  GNU General Public License v3.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated Mar 9, 2026Mar 9, 2026

• comp-med.github.io

  Public
  GitHub Pages website for the Computational Medicine Group

  GNU General Public License v3.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated Feb 13, 2026Feb 13, 2026

• tnap-alpl-ukb

  Public
  Scripts accompanying Hussain et al (2026); Nature

  Shell

  •00 forks•00 stars•00 issues•00 pull requests•Updated Feb 11, 2026Feb 11, 2026

• ukb-mgwas

  Public
  R

  •

  GNU General Public License v3.0

  •11 fork•22 stars•00 issues•00 pull requests•Updated Jan 16, 2026Jan 16, 2026

• scallop-ukbb-ma

  Public
  This repository contains code associated with the study "Large-scale proteogenomic meta-analyses highlight N-linked glycosylation as an important regulator of t…

  R

  •

  GNU General Public License v3.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated Dec 23, 2025Dec 23, 2025

• nf-munge-sumstats

  Public
  Nextflow pipeline to download and format (i.e. munge) GWAS summary statistics

  Nextflow

  •00 forks•00 stars•00 issues•00 pull requests•Updated Nov 25, 2025Nov 25, 2025

• nf-download-sumstats

  Public
  Nextflow pipeline for downloading raw GWAS summary statistics to be then processed using `nf-munge-sumstats`

  Nextflow

  •00 forks•00 stars•00 issues•00 pull requests•Updated Nov 24, 2025Nov 24, 2025

• gwascatftp

  Public
  R package to access GWAS Catalog FTP data

  R

  •

  GNU General Public License v3.0

  •11 fork•33 stars•00 issues•00 pull requests•Updated Nov 13, 2025Nov 13, 2025

• protein-foundations-ukb-olink-50k

  Public
  A code repository for the paper https://www.medrxiv.org/content/10.1101/2025.01.09.25320257v1

  R

  •

  GNU General Public License v3.0

  •00 forks•44 stars•00 issues•00 pull requests•Updated Sep 10, 2025Sep 10, 2025

• r-prodente

  Public
  Companion R package for a publication to run enrichment analysis across protein determining factors

  R

  •

  GNU General Public License v3.0

  •00 forks•55 stars•00 issues•00 pull requests•Updated Sep 8, 2025Sep 8, 2025

• project-template

  Public template
  A suggested directory and file structure for analysis projects in the computational medicine group

  Shell

  •00 forks•00 stars•00 issues•00 pull requests•Updated Sep 3, 2025Sep 3, 2025

• nf-dbsnp

  Public
  Nextflow pipeline to download and format the latest dbsnp release

  Nextflow

  •00 forks•00 stars•00 issues•00 pull requests•Updated Aug 26, 2025Aug 26, 2025

• nf-template

  Public template
  Template directory for Nextflow pipelines providing basic files and directories when setting up a new workflow

  Nextflow

  •00 forks•00 stars•00 issues•00 pull requests•Updated Aug 21, 2025Aug 21, 2025

• nf-nmr-coloc

  Public
  Nextflow pipeline to run metabolome-wide colocalization analysis based on the `nf-scallop-coloc` pipeline.

  R

  •00 forks•00 stars•00 issues•00 pull requests•Updated Dec 17, 2024Dec 17, 2024

• proteome-determinants-somalogic

  Public
  R

  •00 forks•11 star•00 issues•00 pull requests•Updated Jul 11, 2024Jul 11, 2024

• sparse-proteomic-prediction-of-common-and-rare-diseases

  Public
  This repository contains code associated with the study "Proteomic signatures improve risk predictions for common and rare diseases" (DOI pending) The provided…

  R

  •55 forks•1919 stars•11 issue•00 pull requests•Updated Jul 3, 2024Jul 3, 2024

• script-backup-utility

  Public
  Bash scripts to search and backup all files in specific directories with a specific extension.

  Shell

  •00 forks•00 stars•00 issues•00 pull requests•Updated May 10, 2024May 10, 2024

• phecode-covid19-ukb

  Public
  R

  •00 forks•33 stars•00 issues•00 pull requests•Updated Apr 17, 2024Apr 17, 2024

• phecode-gwas-ukb

  Public
  R

  •00 forks•11 star•00 issues•00 pull requests•Updated Mar 19, 2024Mar 19, 2024

• all-inclusive-r-apptainer

  Public
  Definition files for building an R container using radian and including various additional libraries for installing R packages.

  Shell

  •00 forks•00 stars•00 issues•00 pull requests•Updated Feb 12, 2024Feb 12, 2024

• olink-fasting-study

  Public
  R

  •

  GNU General Public License v3.0

  •00 forks•44 stars•00 issues•00 pull requests•Updated Jan 10, 2024Jan 10, 2024

• missingpy

  Public
  Missing Data Imputation for Python (2023 update)

  Python

  •

  GNU General Public License v3.0

  •6464 forks•00 stars•00 issues•00 pull requests•Updated Oct 24, 2023Oct 24, 2023

• .github

  Public
  Public organization README repository.

  00 forks•00 stars•00 issues•00 pull requests•Updated Oct 18, 2023Oct 18, 2023