deploy: phasorpy/phasorpy@8c01022

Author: cgohlke

docs/main/_downloads/08259e68fc838871e73e49dc5a3a2eb1/phasorpy_cursor.ipynb

@@ -22,7 +22,7 @@
       },
       "outputs": [],
       "source": [
-        "from phasorpy.color import CATEGORICAL\nfrom phasorpy.cursor import (\n    mask_from_circular_cursor,\n    mask_from_elliptic_cursor,\n    mask_from_polar_cursor,\n    pseudo_color,\n)\nfrom phasorpy.datasets import fetch\nfrom phasorpy.io import signal_from_lsm\nfrom phasorpy.phasor import phasor_from_signal, phasor_threshold\nfrom phasorpy.plot import PhasorPlot, plot_image"
+        "from phasorpy.color import CATEGORICAL\nfrom phasorpy.cursor import (\n    mask_from_circular_cursor,\n    mask_from_elliptic_cursor,\n    mask_from_polar_cursor,\n    pseudo_color,\n)\nfrom phasorpy.datasets import fetch\nfrom phasorpy.filter import phasor_threshold\nfrom phasorpy.io import signal_from_lsm\nfrom phasorpy.phasor import phasor_from_signal\nfrom phasorpy.plot import PhasorPlot, plot_image"
       ]
     },
     {

docs/main/_downloads/18de1ed1105dda1f0c5220a278448c20/phasorpy_phasor_from_lifetime.zip

@@ -22,7 +22,7 @@
       },
       "outputs": [],
       "source": [
-        "import numpy\nfrom matplotlib import pyplot\n\nfrom phasorpy.color import CATEGORICAL\nfrom phasorpy.cursor import mask_from_circular_cursor, pseudo_color\nfrom phasorpy.datasets import fetch\nfrom phasorpy.io import signal_from_fbd, signal_from_lsm\nfrom phasorpy.lifetime import phasor_calibrate\nfrom phasorpy.phasor import (\n    phasor_filter_median,\n    phasor_from_signal,\n    phasor_threshold,\n)\nfrom phasorpy.plot import PhasorPlot, plot_image, plot_phasor"
+        "import numpy\nfrom matplotlib import pyplot\n\nfrom phasorpy.color import CATEGORICAL\nfrom phasorpy.cursor import mask_from_circular_cursor, pseudo_color\nfrom phasorpy.datasets import fetch\nfrom phasorpy.filter import phasor_filter_median, phasor_threshold\nfrom phasorpy.io import signal_from_fbd, signal_from_lsm\nfrom phasorpy.lifetime import phasor_calibrate\nfrom phasorpy.phasor import phasor_from_signal\nfrom phasorpy.plot import PhasorPlot, plot_image, plot_phasor"
       ]
     },
     {

docs/main/_downloads/19abb37e5abbed9bd2dd4b38aeb4ea74/phasorpy_multidimensional.ipynb

@@ -22,7 +22,7 @@
       },
       "outputs": [],
       "source": [
-        "import math\nimport os\nfrom tempfile import TemporaryDirectory\n\nimport numpy\nfrom numpy.testing import assert_allclose\n\nfrom phasorpy.lifetime import (\n    phasor_calibrate,\n    phasor_to_apparent_lifetime,\n)\nfrom phasorpy.phasor import (\n    phasor_filter_median,\n    phasor_from_signal,\n    phasor_threshold,\n    phasor_transform,\n)\nfrom phasorpy.plot import (\n    plot_histograms,\n    plot_phasor,\n    plot_phasor_image,\n    plot_signal_image,\n)"
+        "import math\nimport os\nfrom tempfile import TemporaryDirectory\n\nimport numpy\nfrom numpy.testing import assert_allclose\n\nfrom phasorpy.filter import phasor_filter_median, phasor_threshold\nfrom phasorpy.lifetime import phasor_calibrate, phasor_to_apparent_lifetime\nfrom phasorpy.phasor import phasor_from_signal, phasor_transform\nfrom phasorpy.plot import (\n    plot_histograms,\n    plot_phasor,\n    plot_phasor_image,\n    plot_signal_image,\n)"
       ]
     },
     {

docs/main/_downloads/1b3c132ff7b40bb13bb60712fdfbc4bc/phasorpy_io.ipynb

@@ -14,14 +14,14 @@
 # Import required modules and functions:
 
 from phasorpy.datasets import fetch
-from phasorpy.io import signal_from_imspector_tiff
-from phasorpy.lifetime import phasor_calibrate
-from phasorpy.phasor import (
+from phasorpy.filter import (
     phasor_filter_median,
     phasor_filter_pawflim,
-    phasor_from_signal,
     phasor_threshold,
 )
+from phasorpy.io import signal_from_imspector_tiff
+from phasorpy.lifetime import phasor_calibrate
+from phasorpy.phasor import phasor_from_signal
 from phasorpy.plot import plot_image, plot_phasor
 
 # %%

docs/main/_downloads/1b84065f650ab6632b301a73aaa06bca/phasorpy_filter.py

@@ -242,20 +242,23 @@
 # Filter phasor coordinates
 # -------------------------
 #
+# The :py:mod:`phasorpy.filter` module provides functions to filter signals
+# and phasor coordinates.
+#
 # Applying median filter to the calibrated phasor coordinates,
 # often multiple times, improves contrast and reduces noise.
 # The filter is applied independently to the real and imaginary components,
 # but not to the signal average:
 
-from phasorpy.phasor import phasor_filter_median
+from phasorpy.filter import phasor_filter_median
 
 mean, real, imag = phasor_filter_median(mean, real, imag, size=3, repeat=2)
 
 # %%
 # Pixels with low intensities are commonly excluded from analysis and
 # visualization of phasor coordinates:
 
-from phasorpy.phasor import phasor_threshold
+from phasorpy.filter import phasor_threshold
 
 mean, real, imag = phasor_threshold(mean, real, imag, mean_min=1)