some reorganization of the website

Author: nevrome

_sidebar.md

@@ -5,34 +5,35 @@
 </p>
 
 * [Home](home.md)
-* [News](news.md)
-* [<i class="fa fa-comments" aria-hidden="true"></i> Blog](http://blog.poseidon-adna.org)
 * [Getting started](getting_started.md)
 * [Tutorials](tutorials.md)
-* [Background](background.md)
+* **<i class="fas fa-link" aria-hidden="true"></i>&nbsp; Resources**
+	* [<i class="fas fa-globe-europe" aria-hidden="true"></i> Archive explorer](https://server.poseidon-adna.org)
+	* [<i class="fas fa-newspaper" aria-hidden="true"></i> Paper directory](https://papers.poseidon-adna.org/)
+	* [<i class="fa fa-comments" aria-hidden="true"></i> Blog](http://blog.poseidon-adna.org)
+	* [<i class="fab fa-github" aria-hidden="true"></i> Website Github repo](https://github.com/poseidon-framework/poseidon-framework.github.io)
 * **<i class="fas fa-clipboard-list" aria-hidden="true"></i>&nbsp; The Poseidon Standard**
 	* [Package definition](standard.md)
-	* [Changelog](changelog.md)
 	* [Genotype data details](genotype_data.md)
 	* [.janno file details](janno_details.md)
 	* [.ssf file details](ssf_details.md)
+	* [Changelog](changelog.md)
 * **<i class="fas fa-tools" aria-hidden="true"></i>&nbsp; The Poseidon Software**
-	* [Version overview table](version_table.md)
 	* [trident CLI software](trident.md)
 	* [xerxes CLI software](xerxes.md)
 	* [qjanno CLI software](qjanno.md)
 	* [janno R package](janno_r_package.md)
 	* [Developer notes](dev_notes.md)
+	* [Version overview table](version_table.md)
 * **<i class="fas fa-download" aria-hidden="true"></i>&nbsp; The Poseidon Archives**
 	* [Public archives](archive_overview.md)
-	* [Paper Directory](paper-directory.md)
-	* [<i class="fas fa-globe-europe" aria-hidden="true"></i> Archive explorer](https://server.poseidon-adna.org)
-	* [Web API](web_api.md)
-	* [Submission guide](archive_submission_guide.md)
+	* [Contribution guide](archive_submission_guide.md)
 	* [Review guide](archive_reviewer_guide.md)
 	* [Minotaur workflow](minotaur.md)
+	* [Web API](web_api.md)
 * **Context**
+	* [Background](background.md)
 	* [Code of Conduct](conduct.md)
 	* [Licensing](licenses.md)
 	* [Acknowledgements](acknowledgements.md)
-	* [<i class="fab fa-github" aria-hidden="true"></i> This page on Github](https://github.com/poseidon-framework/poseidon-framework.github.io)
+

archive_overview.md

@@ -12,13 +12,11 @@ At the moment there are three archives, which are described below:
 
 We opted to maintain these archives with [Git](https://git-scm.com) on [GitHub](https://github.com/poseidon-framework) to ensure clean version management on the file level. The context data in a Poseidon package is text data that can be stored and maintained easily with line-wise version control. Unfortunately that does not hold true for the large genotype data files. They are not suitable to be handled in Git directly. Instead we rely on GitHub's [large file storage system](https://docs.github.com/en/repositories/working-with-files/managing-large-files/about-large-files-on-github), which comes with a number of technical drawbacks both for developers and users of the Poseidon archives.
 
-We therefore generally do **not** recommend to use the GitHub repositories for end-user-level access to the data. You can explore and download the packages through
+We therefore ask you **not** to use the GitHub repositories for end-user-level access to the data, but only if you want to report an issue or suggest changes to the data (as described [here](archive_submission_guide.md)).
 
-- an [archive viewer](https://server.poseidon-adna.org) provided by our webserver
-- our [Web API](web_api)
-- the [`fetch`](trident#fetch-command) and [`list --remote`](trident#list-command) commands of trident, which use the API internally
+!> Never clone the archive repositories without `GIT_LFS_SKIP_SMUDGE=1`. Always clone with `GIT_LFS_SKIP_SMUDGE=1 git clone ...`.
 
-We do recommend that you work through GitHub, though, if you want to report an issue or suggest changes to the data (as described [here](archive_submission_guide.md)).
+You can explore and download the packages through an [archive viewer](https://server.poseidon-adna.org) provided by our webserver, our [Web API](web_api), or the [`fetch`](trident#fetch-command) and [`list --remote`](trident#list-command) commands of trident, which use the API internally.
 
 ## The Poseidon Community Archive (PCA)
 

archive_reviewer_guide.md

@@ -4,7 +4,7 @@ The role of the Poseidon package reviewer is to help ensuring quality standards
 
 But there are some aspects we cannot check, such as the scientific correctness of the given information. And there are other we don't want to formally check, because they are not included in the core definition of a Poseidon package, but just policy for our public archives. For these, we rely on a checklist every package author has to fill, and finally manual reviews.
 
-!> This documentation primarily applies to reviews for the [Poseidon Community Archive](archive_overview).
+?> This documentation primarily applies to reviews for the [Poseidon Community Archive](archive_overview).
 
 ## GitHub Pull Requests
 

archive_submission_guide.md

@@ -4,7 +4,9 @@ The Poseidon framework has a strongly decentralized philosophy and relies very m
 
 We assume you have some basic knowledge about using a command line software like [`trident`](trident), and how to handle Git and GitHub. If not, then you can become knowledgable quickly about the latter, for example [here](https://githubtraining.github.io/training-manual).
 
-!> This documentation only covers submissions to the [Poseidon Community Archive](archive_overview). Look [here](minotaur) for the submission process to the [Poseidon Minotaur Archive](archive_overview).
+?> This documentation only covers submissions to the [Poseidon Community Archive](archive_overview). Look [here](minotaur) for the submission process to the [Poseidon Minotaur Archive](archive_overview).
+
+!> Never clone the archive repositories without `GIT_LFS_SKIP_SMUDGE=1`. Always clone with `GIT_LFS_SKIP_SMUDGE=1 git clone ...`.
 
 ## Archive curation roles
 

home.md

@@ -174,6 +174,8 @@ Poseidon fosters a <b>growing community</b> of users, package maintainers and de
 
 ### Latest news
 
+Follow us on <a href=https://ecoevo.social/@poseidon>Mastodon <i class="fab fa-mastodon" aria-hidden="true"></i></a> or via <a href=https://ecoevo.social/@poseidon.rss>RSS <i class="fa fa-rss" aria-hidden="true"></i></a>
+
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@@ -193,7 +195,7 @@ Poseidon fosters a <b>growing community</b> of users, package maintainers and de
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@@ -233,8 +235,6 @@ Poseidon fosters a <b>growing community</b> of users, package maintainers and de
 
 </div>
 
-[... read more](news.md)
-
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