Allen Institute for Neural Dynamics
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aind-ephys-pipeline
aind-ephys-pipeline PublicAIND pipeline for processing extracellular electrophysiology data
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aind-data-schema
aind-data-schema PublicA library that defines AIND data schema and validates JSON.
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openscope-community-predictive-processing
openscope-community-predictive-processing PublicThis repository serves as a hub for community-driven contributions, documentation, and project tracking of the OpenScope Predictive Processing Community project.
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aind-ephys-spikesort-kilosort25-full
aind-ephys-spikesort-kilosort25-full PublicCodeOcean capsule for full electrophysiology analysis pipeline using Kilosort2.5 via SpikeInterface.
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supervoxel-loss
supervoxel-loss PublicEfficient connectivity-preserving loss function for training neural networks to perform instance segmentation.
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ibl-ephys-alignment-gui
ibl-ephys-alignment-gui PublicForked from int-brain-lab/iblapps
Tool for aligning electrophysiological features to anatomical landmarks
Repositories
- aind-file-standards Public
This repository contains the file standards for the Allen Institute for Neural Dynamics
AllenNeuralDynamics/aind-file-standards’s past year of commit activity - provenance_test_capsule Public
AllenNeuralDynamics/provenance_test_capsule’s past year of commit activity - harp.device.quac Public
0364: This repository contains the hardware, firmware, and software related to the Harp quad DAC
AllenNeuralDynamics/harp.device.quac’s past year of commit activity - AutoTomeQC Public
Automates sectioning quality control for the Prototome/Pylasso. Analyzes block face images to grade cuts (Go/No-Go/Unsure) based on knife marks, splits, thickness, etc.
AllenNeuralDynamics/AutoTomeQC’s past year of commit activity - aind-ophys-nwb Public
Write NWB files for data generated with two-photon ophys pipelines (currently multiplane only)
AllenNeuralDynamics/aind-ophys-nwb’s past year of commit activity - aind-ophys-dff Public
AllenNeuralDynamics/aind-ophys-dff’s past year of commit activity - aind-dft-ephys-analysis Public
shared library for dynamic foraging task (DFT) - neuropixels analysis
AllenNeuralDynamics/aind-dft-ephys-analysis’s past year of commit activity
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