Update bustools inspect to account for multi-barcode onlists (e.g for SPLiT-seq) - #114
Open
mcaskey6 wants to merge 1 commit into
Open
Update bustools inspect to account for multi-barcode onlists (e.g for SPLiT-seq)#114mcaskey6 wants to merge 1 commit into
mcaskey6 wants to merge 1 commit into
Conversation
…es for complex cell barcodes
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
1 participant
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
Unlike
bustools correct, the currentbustools inspectassumes that each line of the onlist contains a single barcode, which is not true of onlists for combinatorial barcode technologies. This results in incorrect values for "numBarcodesOnOnlist", percentageBarcodesOnOnlist", "numReadsOnOnlist", and "percentageReadsOnOnlist". This patch corrects for this by updatingbustools inspectto properly parse multi-column onlists