Add parentage functions#64

Merged

alex-sandercock merged 23 commits into

developmentfrom

add_parentage_functions

Jun 5, 2026

Commits on Apr 22, 2026

Merge pull request #58 from Breeding-Insight/development
josuechinchilla
authored
corrected importFrom statement in parentage functions and ped_check

josue.chinchilla
authored and
josue.chinchilla
committed
updated NAMESPACE to reflect updated importFrom statements

josue.chinchilla
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josue.chinchilla
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Update R/check_ped.R

josuechinchilla
and
Copilot
authored

Commits on Apr 24, 2026

updated error handling and reporting for check_ped, Also major improvement for documentation on check_ped

josue.chinchilla
authored and
josue.chinchilla
committed

Commits on Apr 27, 2026

updated error handling and reporting for check_ped

josue.chinchilla
authored and
josue.chinchilla
committed
updated parentage functions to work allow user to display NA or not, and to plot results.

josue.chinchilla
authored and
josue.chinchilla
committed
Made edits suggested by autopilot

josue.chinchilla
authored and
josue.chinchilla
committed
added edits suggested by copilot

josue.chinchilla
authored and
josue.chinchilla
committed

Commits on Apr 28, 2026

modified default params

josue.chinchilla
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josue.chinchilla
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Added authors fror functions and made headers concise

josue.chinchilla
authored and
josue.chinchilla
committed

Commits on May 20, 2026

staged comments for next push

josue.chinchilla
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josue.chinchilla
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removed zip option and added specific correction arguments

josue.chinchilla
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josue.chinchilla
committed

Commits on May 22, 2026

finalzied refactoring according to CRAN standards

josue.chinchilla
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josue.chinchilla
committed
Updated functions and descriptions to be CRAN compliant and updatede documentations

josue.chinchilla
authored and
josue.chinchilla
committed

Commits on May 26, 2026

updated parentage functions to standardize inputs and outputs

josue.chinchilla
authored and
josue.chinchilla
committed
updated functions to work as a workflow accepting inputs from objects or file paths, updated documentation and test files

josue.chinchilla
authored and
josue.chinchilla
committed

Commits on May 29, 2026

updated find_parentage to exlcude self comparison and fix bug of ordering genotype matrices for comparisons. updated test file to accomodate nw arguments

josue.chinchilla
authored and
josue.chinchilla
committed

Commits on Jun 1, 2026

Commits on Jun 2, 2026

updated documentation to include updates to find_parentage

josue.chinchilla
authored and
josue.chinchilla
committed
Merge pull request #63 from Breeding-Insight/update_updog2vcf
alex-sandercock
authored

Commits on Jun 5, 2026

Merge branch 'development' into add_parentage_functions
alex-sandercock
authored