Improve docu

.Rbuildignore

@@ -11,7 +11,5 @@
 ^codecov\.yml$
 ^cran-comments\.md$
 ^CRAN-SUBMISSION$
-^revdep$
 ^\.positai$
 ^\.claude$
-^vignettes/\.quarto$

.gitignore

@@ -32,4 +32,3 @@ inst/doc
 /Meta/
 docs
 .positai
-.Rbuildignore

DESCRIPTION

@@ -39,9 +39,9 @@ Suggests:
     testthat (>= 3.0.0),
     rvest,
     usethis,
-    withr
-VignetteBuilder: 
-    quarto
+    withr,
+    knitr
+VignetteBuilder: quarto, knitr
 Config/testthat/edition: 3
 Encoding: UTF-8
 LazyData: true

revdep/checks/libraries.csv

@@ -0,0 +1,36 @@
+package,old,new,delta
+restatis,0.3.0,0.4.0,*
+askpass,1.2.1,1.2.1,
+bit,4.6.0,4.6.0,
+bit64,4.6.0-1,4.6.0-1,
+cachem,1.1.0,1.1.0,
+cli,3.6.5,3.6.5,
+clipr,0.8.0,0.8.0,
+cpp11,0.5.3,0.5.3,
+crayon,1.5.3,1.5.3,
+curl,7.0.0,7.0.0,
+fastmap,1.2.0,1.2.0,
+glue,1.8.0,1.8.0,
+hms,1.1.4,1.1.4,
+httr2,1.2.2,1.2.2,
+lifecycle,1.0.5,1.0.5,
+magrittr,2.0.4,2.0.4,
+memoise,2.0.1,2.0.1,
+openssl,2.3.5,2.3.5,
+pillar,1.11.1,1.11.1,
+pkgconfig,2.0.3,2.0.3,
+prettyunits,1.2.0,1.2.0,
+progress,1.2.3,1.2.3,
+purrr,1.2.1,1.2.1,
+R6,2.6.1,2.6.1,
+rappdirs,0.3.4,0.3.4,
+readr,2.2.0,2.2.0,
+rlang,1.1.7,1.1.7,
+sys,3.4.3,3.4.3,
+tibble,3.3.1,3.3.1,
+tidyselect,1.2.1,1.2.1,
+tzdb,0.5.0,0.5.0,
+utf8,1.2.6,1.2.6,
+vctrs,0.7.1,0.7.1,
+vroom,1.7.0,1.7.0,
+withr,3.0.2,3.0.2,

revdep/library/restatis/new/R6/DESCRIPTION

@@ -0,0 +1,31 @@
+Package: R6
+Title: Encapsulated Classes with Reference Semantics
+Version: 2.6.1
+Authors@R: c(
+    person("Winston", "Chang", , "winston@posit.co", role = c("aut", "cre")),
+    person("Posit Software, PBC", role = c("cph", "fnd"))
+  )
+Description: Creates classes with reference semantics, similar to R's
+    built-in reference classes. Compared to reference classes, R6 classes
+    are simpler and lighter-weight, and they are not built on S4 classes
+    so they do not require the methods package. These classes allow public
+    and private members, and they support inheritance, even when the
+    classes are defined in different packages.
+License: MIT + file LICENSE
+URL: https://r6.r-lib.org, https://github.com/r-lib/R6
+BugReports: https://github.com/r-lib/R6/issues
+Depends: R (>= 3.6)
+Suggests: lobstr, testthat (>= 3.0.0)
+Config/Needs/website: tidyverse/tidytemplate, ggplot2, microbenchmark,
+        scales
+Config/testthat/edition: 3
+Encoding: UTF-8
+RoxygenNote: 7.3.2
+NeedsCompilation: no
+Packaged: 2025-02-14 21:15:19 UTC; winston
+Author: Winston Chang [aut, cre],
+  Posit Software, PBC [cph, fnd]
+Maintainer: Winston Chang <winston@posit.co>
+Repository: CRAN
+Date/Publication: 2025-02-15 00:50:02 UTC
+Built: R 4.5.2; ; 2026-03-15 09:34:15 UTC; unix

revdep/library/restatis/new/R6/INDEX

@@ -0,0 +1,3 @@
+R6Class                 Create an R6 reference object generator
+as.list.R6              Create a list from an R6 object
+is.R6                   Is an object an R6 Class Generator or Object?

revdep/library/restatis/new/R6/LICENSE

@@ -0,0 +1,2 @@
+YEAR: 2024
+COPYRIGHT HOLDER: R6 authors

revdep/library/restatis/new/R6/NAMESPACE

@@ -0,0 +1,12 @@
+# Generated by roxygen2: do not edit by hand
+
+S3method(as.list,R6)
+S3method(format,R6)
+S3method(format,R6ClassGenerator)
+S3method(plot,R6)
+S3method(print,R6)
+S3method(print,R6ClassGenerator)
+S3method(utils::.DollarNames,R6)
+export(R6Class)
+export(is.R6)
+export(is.R6Class)

revdep/library/restatis/new/R6/NEWS.md

@@ -0,0 +1,164 @@
+R6 2.6.1
+========
+
+* Closed #298: In `.DollarNames.R6()`, avoid use of `NextMethod()`. This is to work around a compatibility issue with RStudio IDE. (#299)
+
+
+R6 2.6.0
+========
+
+* R6 methods no longer recommends `initialize` or `.__enclos_env__` in autocomplete.
+
+* The deprecated `lock` parameter has been removed.
+
+* `R6Class()` now prints a message when a `finalize` method is public instead of private.
+
+* When a superclass is not cloneable, then subclasses cannot be cloneable (@IndrajeetPatil, #247).
+
+* Fixed #253: Errors could occur when deep cloning if a member object was an environment with a class that had a `$` method. Deep cloning now uses `get0()` instead of `$`. R6 now requires R >= 3.2. (@zeehio, #274)
+
+R6 2.5.1
+========
+
+* Removed unused packages from `Suggests` section in DESCRIPTION.
+
+R6 2.5.0
+========
+
+* Resolved #195: Slightly clearer message when there is an error in the `initialize()` method.
+
+* Fixed #214: When a non-portable object inheritance was cloned, methods that were inherited (and not overridden) had the wrong environment. (#215, #217)
+
+* Printing R6 objects, no longer includes `.__active__`.
+
+R6 2.4.1
+========
+
+* Cloning active bindings previously relied on buggy behavior in `as.list.environment()`, which would return the active binding's function definition rather than the value from invoking the function. In R 4.0, the behavior will chang so that it returns the value. R6 now no longer relies on this buggy behavior. (#192)
+
+R6 2.4.0
+========
+
+* Fixed #146: Finalizers can now be private methods. (#181)
+
+* Fixed #167: Finalizers now run on cloned objects. (#180)
+
+R6 2.3.0
+========
+
+* Vignettes are no longer included as part of the source package because of their large size. Documentation is now at https://r6.r-lib.org/.
+
+* Fixed #125: The `print.R6` method now always returns the object that was passed to it.
+
+* Fixed #155: In some cases, a cloned object's methods could refer to the wrong `super` object. (#156)
+
+* Fixed #94, #133: When cloning an object which contained a function that is *not* a method, the corresponding function in the new object would have its environment changed, as though it were a method. Now it no longer has a changed environment. (#156)
+
+* Fixed #121: If a `finalize` method was present, it would prevent objects passed to `initialize` from getting GC'd.
+
+* Fixed #158: If a `$set` method of an R6 generator object is given the value `NULL`, it previously removed the named item. Now it adds the named item with the value `NULL`.
+
+* Fixed #159: Printing an R6 object containing a large vector was slow.
+
+
+R6 2.2.2
+========
+
+* Fixed #108: When an object with a `super` object and an active binding in the `super` object was cloned, the new object's `super` object did not get the active binding -- it was a normal function.
+
+* Fixed #119: When a class had two levels of inheritance, an instance of that class's `super` object could contain methods that had an incorrect enclosing environment.
+
+
+R6 2.2.1
+========
+
+* Vignettes now only try use the microbenchmark package if it is present. This is so that the package builds properly on platforms where microbenchmark is not present, like Solaris.
+
+* Fixed ending position for `trim()`.
+
+R6 2.2.0
+========
+
+* Classes can define finalizers explicitly, by defining a public `finalize` method. (#92, #93)
+
+* Added function `is.R6()` and `is.R6Class()`. (#95)
+
+* Fixed #96: R6 now avoids using `$` and `[[` after the class has been assigned to the object. This allows the user to provide their own methods for `$` and `[[` without causing problems to R6's operation.
+
+R6 2.1.3
+========
+
+* The `plot` S3 method for R6 objects will call `$plot` on the object if present. (#77)
+
+* Fixed printing of members that are R6 objects. (#88)
+
+* Fixed deep cloning for non-portable classes. (#85)
+
+* Added `as.list.R6` method. (#91)
+
+R6 2.1.2
+========
+
+* Implemented `format.R6()` and `format.R6ClassGenerator`, the former calls a public `format` method if defined. This might change the functionality of existing classes that define a public `format` method intended for other purposes (#73. Thanks to Kirill Müller)
+
+* Functions are shown with their interface in `print` and `format`, limited to one line (#76. Thanks to Kirill Müller)
+
+* R6 objects and generators print out which class they inherit from. (#67)
+
+R6 2.1.1
+========
+
+* Fixed a bug with printing R6 objects when a `[[` method is defined for the class. (#70)
+
+* Fixed cloning of objects that call a `super` method which accesses `private`. (#72)
+
+R6 2.1.0
+========
+
+* Added support for making clones of R6 objects with a `clone()` method on R6 objects. The `deep=TRUE` option allows for making clones that have copies of fields with reference semantics (like other R6 objects). (#27)
+
+* Allow adding public or private members when there were no public or private members to begin with. (#51)
+
+* Previously, when an R6 object was printed, it accessed (and called) active bindings. Now it simply reports that a field is an active binding. (#37, #38. Thanks to Oscar de Lama)
+
+* Printing private members now works correctly for portable R6 objects. (#26)
+
+* The 'lock' argument has been renamed to 'lock_objects'. Also, there is a new argument, 'lock_class', which can prevent changes to the class. (#52)
+
+* Fixed printing of NULL fields.
+
+R6 2.0.1
+========
+
+* A superclass is validated on object instantiation, not on class creation.
+
+* Added `debug` and `undebug` methods to generator object.
+
+R6 2.0
+========
+
+* [BREAKING CHANGE] Added `portable` option, which allows inheritance across different package namespaces, and made it the default.
+
+* Added `set()` method on class generator object, so new fields and methods can be added after the generator has been created.
+
+* All of the functions involved in instantiating objects are encapsulated in an environment separate from the R6 namespace. This means that if a generator is created with one version of R6, saved, then restored in a new R session that has a different version of R6, there shouldn't be any problems with compatibility.
+
+* Methods are locked so that they can't be changed. (Fixes #19)
+
+* Inheritance of superclasses is dynamic; instead of reading in the superclass when a class is created, this happens each time an object is instantiated. (Fixes #12)
+
+* Added trailing newline when printing R6 objects. (Thanks to Gabor Csardi)
+
+* The `print` method of R6 objects can be redefined. (Thanks to Gabor Csardi)
+
+R6 1.0.1
+========
+
+* First release on CRAN.
+
+* Removed pryr from suggested packages.
+
+R6 1.0
+========
+
+* First release

revdep/library/restatis/new/R6/R/R6

@@ -0,0 +1,27 @@
+#  File share/R/nspackloader.R
+#  Part of the R package, https://www.R-project.org
+#
+#  Copyright (C) 1995-2012 The R Core Team
+#
+#  This program is free software; you can redistribute it and/or modify
+#  it under the terms of the GNU General Public License as published by
+#  the Free Software Foundation; either version 2 of the License, or
+#  (at your option) any later version.
+#
+#  This program is distributed in the hope that it will be useful,
+#  but WITHOUT ANY WARRANTY; without even the implied warranty of
+#  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+#  GNU General Public License for more details.
+#
+#  A copy of the GNU General Public License is available at
+#  https://www.r-project.org/Licenses/
+
+local({
+    info <- loadingNamespaceInfo()
+    pkg <- info$pkgname
+    ns <- .getNamespace(as.name(pkg))
+    if (is.null(ns))
+        stop("cannot find namespace environment for ", pkg, domain = NA);
+    dbbase <- file.path(info$libname, pkg, "R", pkg)
+    lazyLoad(dbbase, ns, filter = function(n) n != ".__NAMESPACE__.")
+})

revdep/library/restatis/new/R6/help/AnIndex

@@ -0,0 +1,6 @@
+R6-package	R6-package
+as.list.R6	as.list.R6
+is.R6	is.R6
+is.R6Class	is.R6
+R6	R6Class
+R6Class	R6Class

revdep/library/restatis/new/R6/help/R6-package.html

@@ -0,0 +1,2 @@
+<!DOCTYPE html>
+<html><head><meta http-equiv='refresh' content='0; url=../html/R6-package.html'><title>HTTP redirect</title></head><body></body></html>

revdep/library/restatis/new/R6/help/R6.html

@@ -0,0 +1,2 @@
+<!DOCTYPE html>
+<html><head><meta http-equiv='refresh' content='0; url=../html/R6Class.html'><title>HTTP redirect</title></head><body></body></html>

revdep/library/restatis/new/R6/help/R6Class.html

@@ -0,0 +1,2 @@
+<!DOCTYPE html>
+<html><head><meta http-equiv='refresh' content='0; url=../html/R6Class.html'><title>HTTP redirect</title></head><body></body></html>

revdep/library/restatis/new/R6/help/as.list.R6.html

@@ -0,0 +1,2 @@
+<!DOCTYPE html>
+<html><head><meta http-equiv='refresh' content='0; url=../html/as.list.R6.html'><title>HTTP redirect</title></head><body></body></html>