43 moisture decay uptake rate modification in script#47
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jgwalkup merged 14 commits intoJul 15, 2026
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Closes #35 Writes a set of CSV files to a folder instead of 'pickle'ing the output data class. Is more human-readable and should make reading data by post-processing scripts easier. The drawback is that if new members of unsupported type are introduced they may not be written (a warning is raised in that case) and adding extra case to the export functions might be necessary.
Refactor export methods to support CSV and NetCDF formats.
Added a new method to export data to NetCDF format and renamed the existing export function.
Add export format option for output files. The user can now specify in the runtime.txt file if they want model output files to be in NetCDF (default) or CSV format.
Added 'output_CSV' parameter to runtime configuration to indicate the file format of model outputs.
automate the Allison equation input - decay and uptake rates will be introduced now through the parameters files
Change on Allison equation inputs
Update microbe.py - debugging for the code to be able to run with fungi also in the grid
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Checked file changes, this update has major revisions to the output format, and updated functions and parameters for the moisture dependence of decay and monomer uptake.
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July 15, 2026 14:23
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Addressing issues #46 #43 so the code is more automatised and fungal cells can also be introduced into the code