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@HallemLab

Hallem Lab

A repository for data and code associated with publications from the Hallem Lab at UCLA.

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  1. Wild_Worm_Codon_Adapter Wild_Worm_Codon_Adapter Public

    Shiny Web app for automatic codon optimization based on codon usage in Strongyloides species, Pristionchus species, Brugia malayi, as well as user-provided custom codon lookup tables

    R 3

  2. Strongyloides_RNAseq_Browser Strongyloides_RNAseq_Browser Public

    Shiny Web App for Browsing/Analysis of publicly available Strongyloides RNAseq datasets

    R 1

  3. Bryant-DeMarco-Hallem-2021 Bryant-DeMarco-Hallem-2021 Public

    Preprocessing and analysis files related to the Strongyloides RNAseq Browser

    HTML 1 1

  4. Bryant-and-Hallem-2021 Bryant-and-Hallem-2021 Public

    Preprocessing and analysis files related to the Wild Worm Codon Adapter

    HTML 1

  5. Bryant_et_al_2021 Bryant_et_al_2021 Public

    Data and code associated with the Hallem Lab manuscript titled "The neural basis of heat seeking in a human-infective parasitic worm."

    HTML

  6. Thermotaxis_Tracker Thermotaxis_Tracker Public

    Thermotaxis Single Worm Tracking Codebase

    MATLAB

Repositories

Showing 10 of 18 repositories
  • Frausto_et_al_2026 Public

    Repository for the manuscript, "cGMP signaling regulates context-dependent sensory valence in C. elegans"

    HallemLab/Frausto_et_al_2026's past year of commit activity
    0 MIT 0 0 0 Updated Jul 28, 2026
  • Walsh_et_al_2026 Public

    Repository for the manuscript, "Neuronally sensed oxygen drives behavior and development in human-infective, skin-penetrating nematodes"

    HallemLab/Walsh_et_al_2026's past year of commit activity
    R 0 MIT 0 0 0 Updated May 7, 2026
  • Wild_Worm_Codon_Adapter Public

    Shiny Web app for automatic codon optimization based on codon usage in Strongyloides species, Pristionchus species, Brugia malayi, as well as user-provided custom codon lookup tables

    HallemLab/Wild_Worm_Codon_Adapter's past year of commit activity
    R 3 MIT 0 0 0 Updated Aug 1, 2025
  • Patel_et_al_2025 Public

    Repository for the manuscript, "Dopamine signaling drives skin invasion by human-infective nematodes," by Ruhi Patel, Gloria Bartolo, Michelle L. Castelletto, Aracely Garcia Romero, Astra S. Bryant, George W. Agak, and Elissa A. Hallem.

    HallemLab/Patel_et_al_2025's past year of commit activity
    0 0 0 0 Updated Jul 30, 2025
  • Abell_et_al_2025 Public

    Repository for the manuscript, "

    HallemLab/Abell_et_al_2025's past year of commit activity
    MATLAB 0 MIT 0 0 0 Updated May 19, 2025
  • Strongyloides_RNAseq_Browser Public

    Shiny Web App for Browsing/Analysis of publicly available Strongyloides RNAseq datasets

    HallemLab/Strongyloides_RNAseq_Browser's past year of commit activity
    R 1 MIT 0 2 (1 issue needs help) 0 Updated Apr 9, 2025
  • Parasite_Genome_Annotations Public

    Community annotations for parasite genomes

    HallemLab/Parasite_Genome_Annotations's past year of commit activity
    R 0 MIT 0 0 0 Updated Jan 23, 2025
  • Banerjee-et-al-2025 Public

    All data accompanying the manuscript, "Carbon dioxide shapes parasite-host interactions in a human-infective nematode."

    HallemLab/Banerjee-et-al-2025's past year of commit activity
    0 0 0 0 Updated Dec 13, 2024
  • Bryant_et_al_2021 Public

    Data and code associated with the Hallem Lab manuscript titled "The neural basis of heat seeking in a human-infective parasitic worm."

    HallemLab/Bryant_et_al_2021's past year of commit activity
    HTML 0 0 0 0 Updated Mar 25, 2024
  • Banerjee_et_al_2023 Public

    All raw data that support the findings of the manuscript "Distinct neural circuits establish similar chemosensory behaviors across life stages in C. elegans".

    HallemLab/Banerjee_et_al_2023's past year of commit activity
    0 0 0 0 Updated Apr 18, 2023
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