Home

Welcome to the LoopDB wiki!

LoopDB is a module for creating and storing DNA parts for Loop Assembly. It comes with a prebuilt schema for implementing original Loop Assembly protocol, but is completely general and allows alternative schema definitions ( see manual-example ).

For a quick introduction please read the Getting started section. Have a look at the Tables section for a brief description of the underlying data structure. Check out example folders with some code to get you started. You can clone just examples branch, without the sorce code by

git clone -b examples git@github.com:HaseloffLab/LoopDB.git

Refer to Advanced for getting hold of SQLAlchemy functions.

Any other questions? Please file an issue, or contact me at m.delmans@gmail.com