COMP: Install the tools the analysis jobs actually invoke - #78
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This was referenced Sep 22, 2026
hjmjohnson
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September 22, 2026 00:39
Two of the five Build and Test jobs have never run to completion. sanitize-clang-linux invokes scan-build, which lives in clang-tools and was not installed, so the job exits 127 before configuring. rel-clang-macos asks brew for "sed", which is not a formula; brew fails the step and the job exits 1 before configuring. The GNU sed the dashboard scripts expect is gnu-sed. Both predate the workflow's first successful run, so neither has regressed; the trigger named the wrong branch until recently and the jobs never executed.
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Two of the five
Build and Testjobs have never run to completion. Neither failure is in the code under review — both die installing dependencies.sanitize-clang-linuxscan-build: command not foundclang-toolsnever installedrel-clang-macosNo available formula with the name "sed"sedis not a Homebrew formulaWhy this went unnoticed
Both defects date from the 2025 conversion to GitHub Actions and have never regressed, because the jobs never ran. The workflow's trigger named
mainwhile this repository's branch ismaster, soBuild and Testdid not execute onmasteror on pull requests until #77 corrected it. The first real runs then exposed the dependency lists as they had always been.macOS ships BSD
sed; the GNU one the dashboard scripts expect isgnu-sed.scan-buildships inclang-toolson Debian and Ubuntu, not inclangitself.What is still red after this, and why
use_prefix-gcc-linuxsanitize-clang-linuxrel-clang-macoscoverage-gcc-linux-Wsign-comparewarnings, all fixed by #51valgrind-gcc-linuxcoverage-gcc-linuxreports 345/345 tests passing, 0 compiler errors and 2 compiler warnings, then fails the check atcmake/nifti_common.cmake:472, which treats any warning as fatal. Reproduced with that job's own flags on Ubuntu 24.04 / GCC 13.3, the warnings are:#51 changes exactly those three lines. Merging it turns this job green without relaxing the gate.
valgrind-gcc-linuxis the one that needs investigation rather than a fix. It reports 331/331 tests passing, zero compiler warnings and zero errors, and still fails atnifti_common.cmake:472. None of the five conditions in thatifobviously matches, so which one fires should be established before anything there is changed.Note on the leak fixes that just merged
#62, #60 and #69 do not change the memcheck result. Measured on Ubuntu 24.04 / GCC 13.3, Debug, cifti and fsl on,
masterandmasterplus all three both reportPotential Memory Leak - 177across the same thirteen tests with identical per-test counts.Those changes are still correct. They free memory on error paths, and the suite does not take error paths — consistent with there being no malformed-input corpus. Whatever
valgrind-gcc-linuxis reporting, it is not what those three PRs addressed.