13.8.4

What's Changed

🐛 Bug Fixes

• fix: indexing issue between DECAYS::Particle and REC::VertDoca bank by @skuditha in #1212

🔘 RG-L Updates

• Continue with RG-L Fix in the HitReader and AHDCEngine by @mathieuouillon in #1207

🚀 Performance Updates

• fix: reduce cosine calculations in DC TableLoader by @baltzell in #1237
• fix: replace chains of DC ifs with if-elses by @baltzell in #1245
• fix: reduce DCA swim stopper overhead by @baltzell in #1244
• fix: remove unnecessary magfield probe check by @baltzell in #1250
• fix: reduce thread contention in DC TableLoader by @baltzell in #1238
• fix: more hash/index-based IndexedTable access in DC by @baltzell in #1236
• fix: reduce CVT atan calculations by @baltzell in #1243

📦 Dependency Updates

• ci(deps): bump softprops/action-gh-release from 2 to 2.6.1 by @dependabot[bot] in #1209
• ci(deps): bump actions/deploy-pages from 4 to 5 by @dependabot[bot] in #1208
• ci(deps): bump actions/upload-pages-artifact from 4 to 5 by @dependabot[bot] in #1227
• ci(deps): bump actions/github-script from 8 to 9 by @dependabot[bot] in #1226

🔘 Other Changes

• add option to only set $PATH by @baltzell in #1219
• feat: decouple macos/linux build jobs to reduce CI latency by @baltzell in #1222
• cleanup: remove unnecessary CLARA reader class by @baltzell in #1223
• cleanup: remove example engine by @baltzell in #1224
• fix: run-clara port-finding on macos by @baltzell in #1221
• fix: disable gnuplot fit logging and log file by @baltzell in #1232
• feat: just run gnuplot automatically from scaling script by @baltzell in #1233
• fix: use events instead of events/thread in scaling script by @baltzell in #1231
• back to events-per-thread and better default threads for scaling script by @baltzell in #1241
• feat: add GitLab profiling and pages jobs by @baltzell in #1248
• feat: add thread affinity options to scaling script by @baltzell in #1239

Full Changelog: 13.8.3...13.8.4

13.8.3

Compatible with GEMC 5.13/5.14. Requires Java 21+. Includes grapes 2.24.

What's Changed

🔘 RG-L Updates

• correct the calculation of z positions of clusters and docaclusters by @zyzhangjlab in #1165
• New T2D function for ALERT AHDC by @mpaolone in #1178
• Fix ATOF and AHDC issues: Remove CalibrationConstantsLoader, use IndexedTable directly for AHDC/ATOF calibration by @mathieuouillon in #1200

🔘 Other Changes

• move jclara jar install earlier, for cleaner log finish by @baltzell in #1180
• build: bump version number to 13.8.3 by @baltzell in #1203

Full Changelog: 13.8.2...13.8.3

13.8.2

Compatible with GEMC 5.13/5.14. Requires Java 21+. Includes grapes 2.24.

What's Changed

🔘 Other Changes

• prevent loading of translation tables if run=0 by @raffaelladevita in #1175

Full Changelog: 13.8.1...13.8.2

13.8.1

Compatible with GEMC 5.13/5.14. Requires Java 21+. Includes grapes 2.24.

What's Changed

🔘 RG-L Updates

• chore(submodule): bump etc/data/nnet from 800f8f3 to d03b07d by @dependabot[bot] in #1162

☕ Java Updates

• build(deps): bump com.github.spotbugs:spotbugs-maven-plugin from 4.9.8.2 to 4.9.8.3 by @dependabot[bot] in #1173

📦 Dependency Updates

• ci(deps): bump actions/download-artifact from 7 to 8 by @dependabot[bot] in #1172

🔘 Other Changes

• fix: use github and propagate tag/branch in clara installer for grapes by @baltzell in #1160
• dc2: fix null issue for finalSV in KF for new HB tracking by @tongtongcao in #1164
• bump: update grapes version by @baltzell in #1167
• fix: catch rare EVIO errors by @baltzell in #1170
• bump: new grapes version by @baltzell in #1171
• build: bump version number to 13.8.1 by @baltzell in #1174

Full Changelog: 13.8.0...13.8.1

13.8.0

Compatible with GEMC 5.13/14. Requires Java 21+. Includes grapes 2.22.

What's Changed

🔘 muCLAS12 Updates

• adding mu reconstruction package for muCLAS12 setup by @raffaelladevita in #1015

🔘 Event Builder

• feat: improve event building for zero-torus data by @baltzell in #1085

🔘 RG-L Updates

• Fix fully qualified name for DocaCluster by @ftouchte in #1125
• Fix N_hits issue & fill AHDC::track bank before KF by @zyzhangjlab in #1137
• Include the charge in the energy loss computation by @ftouchte in #1138

🚀 Performance Updates

• fix: replace loops with global /daq/tt translation table in decoding by @baltzell in #1064
• fix: reduce EVIO branch transversing in decoding, cleanup by @baltzell in #1065
• fix: reduce string comparisons in ADC decoding, cleanup by @baltzell in #1066

☕ Java Updates

• build(deps): bump org.yaml:snakeyaml from 2.5 to 2.6 by @dependabot[bot] in #1133
• build(deps): bump org.apache.maven.plugins:maven-shade-plugin from 3.6.1 to 3.6.2 by @dependabot[bot] in #1141
• build(deps): bump org.apache.maven.plugins:maven-resources-plugin from 3.4.0 to 3.5.0 by @dependabot[bot] in #1142

📦 Dependency Updates

• chore(submodule): bump etc/data/nnet from efa89e4 to 800f8f3 by @dependabot[bot] in #1144
• ci(deps): bump actions/upload-artifact from 6 to 7 by @dependabot[bot] in #1147

🔘 Other Changes

• feat: generalize asprof wrapper script by @baltzell in #1123
• add optional efficiency check by @baltzell in #1131
• feat: add convenience scripts for diffing gold runs by @baltzell in #1124
• update grapes version by @baltzell in #1129
• fix: urwt strip numbering and orientation by @raffaelladevita in #1135
• add ignore-bank option to hipo-diff by @baltzell in #1145
• cleanup rg-l test yaml by @baltzell in #1132
• tie scaling tests to a NUMA socket by @baltzell in #1151
• fix: correct calculated doca in KF tracking by @tongtongcao in #1108
• fix: avoid call to method that recalibrates already-calibrated dsc2 by @raffaelladevita in #1153
• remove rogue clara jar (and strip down EB 2-particle test script) by @baltzell in #1148
• bump grapes version in clara installer by @baltzell in #1154
• fix(build): duplicate maven-enforcer-plugin declaration by @c-dilks in #1155
• DC bank schemas updates by @raffaelladevita in #1157
• Add some TranslationTable javadoc by @baltzell in #1158
• build: bump version number to 13.8.0 by @baltzell in #1159

Full Changelog: 13.7.1...13.8.0

13.7.1

Compatible with GEMC 5.12 and 5.11, except for AHDC and URWELL which will be supported by GEMC 5.13.

Requires Java 21+. Includes grapes 2.20.

What's Changed

🔘 RG-L Updates

• Move Kalman Filter in ALERT engine by @ftouchte in #1100
• Add programs to use doca in helixfitting. by @zyzhangjlab in #1105
• feat: ALERT AI Pre PID by @skuditha in #1112
• truncate AHDC waveforms by @baltzell in #1127

🔧 Maven Updates

• build: automate dependency analysis by @c-dilks in #1101
• build: skip unit tests by default for install phase calls by @c-dilks in #1102

📦 Dependency Updates

• chore(submodule): bump etc/data/nnet from f43cee9 to efa89e4 by @dependabot[bot] in #1118

🔘 Other Changes

• feat: add OptionValue convenience method by @baltzell in #1103
• fix cvmfs github CI issues with 5.4 by @baltzell in #1109
• ci: Revert "fix cvmfs github CI issues with 5.4 (#1109)" by @c-dilks in #1110
• feat: honor/preserve user's option order by @baltzell in #1106
• ci!: remove clas12-validation trigger, in favor of orca by @c-dilks in #1111
• doc: replace CI badge validation -> orca by @c-dilks in #1114
• feat: more user-friendly build error for pre-21 Javas by @baltzell in #1113
• fixing issue with urwell protype dimensions not being set before crea… by @raffaelladevita in #1122
• build: bump version number to 13.7.1 by @baltzell in #1126

New Contributors

• @zyzhangjlab made their first contribution in #1105
• @skuditha made their first contribution in #1112

Full Changelog: 13.7.0...13.7.1

13.7.0

Compatible with GEMC 5.12 and 5.11, except for AHDC which will be supported by GEMC 5.13. Requires Java 21+.

What's Changed

🔘 GEMC Updates

• integrate urwell geometry by @raffaelladevita in #1095

🔘 Other Changes

• Incorporate HipoDiffBank functionality into HipoDiff by @c-dilks in #1093
• use schema directory in dst-maker by @baltzell in #1094
• transform DC covariance matrix for TB tracks at vertex from local to global by @tongtongcao in #1059
• BMT HV cut off by @zieglerv in #1097

Full Changelog: 13.6.0...13.7.0

13.6.0

Compatible with GEMC 5.12 and 5.11, except for AHDC which will be supported by GEMC 5.13. Requires Java 21+.

What's Changed

✨ AI Updates

• add a yaml file to apply new DC engines for new AI models by @tongtongcao in #1091

🔘 RG-L Updates

• Update ahdc geometry by @ftouchte in #1089

☕ Java Updates

• build(deps): bump org.apache.maven.plugins:maven-compiler-plugin from 3.14.1 to 3.15.0 by @dependabot[bot] in #1086

🔘 Other Changes

• fix RAW::tdc.TDC column index by @baltzell in #1084

Full Changelog: 13.5.3...13.6.0

13.5.3

Summary

Compatible with GEMC 5.12 (and 5.11 except for AHDC). Requires Java 21+.

• RG-L calibration and software improvements
• New DC AI replacement for HB KF track-state estimator
• Add orca, to replace clas12-validation

What's Changed

🐛 Bug Fixes

• fix: leftovers from old command-line changes by @baltzell in #1067
• fix: run-clara doesn't work on macos by @c-dilks in #1080

✨ AI Updates

• chore(submodule): bump etc/data/nnet from 636c5e8 to f43cee9 by @dependabot[bot] in #1055
• apply AI model for HB tracking by @tongtongcao in #1057

🔘 RG-L Updates

• feat(ALERTEngine): initialize ATOF detector and check that there are … by @mathieuouillon in #1054
• fix: switch to index-based access for waveform banks by @baltzell in #1063
• Updating how time offsets are applied, dealing with different start t… by @N-Plx in #1074
• Implement the electron vertex for AHDC by @ftouchte in #1077

🚀 Performance Updates

• feat: beautify scaling plot by @baltzell in #1072

🔘 Other Changes

• build(deps): bump ai.djl:bom from 0.35.0 to 0.36.0 by @dependabot[bot] in #1022
• feat: add all-banks and sorting options to hipo-diff by @baltzell in #1060
• feat: add DetectorDescriptor convenience methods by @baltzell in #1061
• feat: add full TranslationTable printout, cleanup by @baltzell in #1062
• feat: increase run-clara JVM memory requests by @baltzell in #1070
• feat(ci): trigger orca by @c-dilks in #1071

Full Changelog: 13.5.2...13.5.3

13.5.2

Summary

Compatible with GEMC 5.12 (and 5.11 except for AHDC). Requires Java 21+.

• New and improved DC AI track-finding model and architecture
• Add DC denoising networks with multi-sector training
• Fix AHDC thread safety and bank variable names
• Logging improvements

What's Changed

🐛 Bug Fixes

• fix: doubled log messages when SplitLogManager.configureHandlers is called twice by @c-dilks in #1043

✨ AI Updates

• chore(submodule): bump etc/data/nnet from 4783867 to 636c5e8 by @dependabot[bot] in #1019
• update DCDenoiseEngine.java with model trained by samples from all 6 sectors by @tongtongcao in #1021
• Add an engine to apply new AI models for forward track finding by @tongtongcao in #1039

🔘 RG-L Updates

• fix: add check for null by @baltzell in #1046
• Fix bank variable names and restore thread-safety for AHDC pulse extraction by @baltzell in #1048

🚀 Performance Updates

• feat: add TranslationTable, for appending CCDB translation tables with DetectorType by @baltzell in #1029

☕ Java Updates

• fix: Timer needs daemon mode (might be post-java8) by @baltzell in #1027
• build(deps): bump org.json:json from 20250517 to 20251224 by @dependabot[bot] in #1037

📦 Dependency Updates

• ci(deps): bump actions/cache from 4 to 5 by @dependabot[bot] in #1036
• ci(deps): bump actions/upload-artifact from 5 to 6 by @dependabot[bot] in #1035
• ci(deps): bump actions/download-artifact from 6 to 7 by @dependabot[bot] in #1034

🔘 Other Changes

• fix: print usage before exiting by @baltzell in #1026
• feat: report non-zero exit code if anything is different by @baltzell in #1023
• feat: move install-clara to bin by @baltzell in #1024
• feat: split decoder CLI interface from separate (shared) class by @baltzell in #1028
• feat: add Clas12Reader clara IO service, for EVIO/HIPO by @baltzell in #1025
• fix: use $JAVA_OPTS in decoder4u by @c-dilks in #1030
• Cleanup documentation by @baltzell in #1041
• Increase CI logging verbosity by @baltzell in #1042
• feat: log level option -l is now case-insenstive by @c-dilks in #1045
• feat: add decoding to recon-util by @baltzell in #1016
• fix: Restore ConstantsManager logging verbosity by @c-dilks in #1052
• build: bump version number to 13.5.2 by @baltzell in #1053

Full Changelog: 13.5.1...13.5.2