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Pull requests: NVIDIA-BioNeMo/bionemo-recipes

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Pull requests list

Evo2 Phage Generation Recipe and Agent Skill
#1717 opened Aug 13, 2026 by jstjohn Collaborator Loading…
5 of 9 tasks
19
Bump gitpython from 3.1.45 to 3.1.58 in /recipes/codonfm_ptl_te dependencies Pull requests that update a dependency file python Pull requests that update Python code
#1713 opened Aug 7, 2026 by dependabot Bot Loading…
2
Bump h2 from 4.3.0 to 4.4.1 in /recipes/codonfm_ptl_te dependencies Pull requests that update a dependency file python Pull requests that update Python code
#1712 opened Aug 7, 2026 by dependabot Bot Loading…
2
Bump cryptography from 42.0.8 to 50.0.0 in /recipes/codonfm_ptl_te dependencies Pull requests that update a dependency file python Pull requests that update Python code
#1709 opened Aug 5, 2026 by dependabot Bot Loading…
2
Bump gitpython from 3.1.46 to 3.1.57 in /interpretability/sparse_autoencoders dependencies Pull requests that update a dependency file python:uv Pull requests that update python:uv code
#1708 opened Aug 4, 2026 by dependabot Bot Loading…
2
Bump black from 25.1.0 to 26.3.1 in /recipes/codonfm_ptl_te dependencies Pull requests that update a dependency file python Pull requests that update Python code
#1706 opened Aug 4, 2026 by dependabot Bot Loading…
2
docs(esm2_native_te): add torch.compile troubleshooting note ciflow:skip Skip all CI tests for this PR
#1703 opened Jul 30, 2026 by melissa-sanabria Loading…
1 of 9 tasks
5
gpt2 SAE recipe: interactive feature-explorer dashboard
#1697 opened Jul 28, 2026 by polinabinder1 Contributor • Draft
2
Bump postcss from 8.5.6 to 8.5.23 in /interpretability/sparse_autoencoders/sae/src/sae/dashboard dependencies Pull requests that update a dependency file javascript Pull requests that update javascript code
#1694 opened Jul 27, 2026 by dependabot Bot Loading…
2
Bump ray from 2.49.2 to 2.56.0 in /recipes/codonfm_ptl_te dependencies Pull requests that update a dependency file python Pull requests that update Python code
#1693 opened Jul 27, 2026 by dependabot Bot Loading…
2
Bump setuptools from 79.0.1 to 83.0.0 in /recipes/codonfm_ptl_te dependencies Pull requests that update a dependency file python Pull requests that update Python code
#1691 opened Jul 22, 2026 by dependabot Bot Loading…
2
Bump pillow from 11.3.0 to 12.3.0 in /recipes/codonfm_ptl_te dependencies Pull requests that update a dependency file python Pull requests that update Python code
#1690 opened Jul 21, 2026 by dependabot Bot Loading…
2
Add HuggingFace naive-pipeline-parallel baseline for Mixtral-8x7B benchmarks
#1689 opened Jul 20, 2026 by faradawn Loading…
2
Fix Evo2TaxonomyLineage.kingdom -> domain rename in docs
#1688 opened Jul 19, 2026 by jannis-baum Contributor Loading…
5 of 9 tasks
2
Bump torch from 2.9.1 to 2.13.0 in /interpretability/sparse_autoencoders dependencies Pull requests that update a dependency file python:uv Pull requests that update python:uv code
#1687 opened Jul 17, 2026 by dependabot Bot Loading…
2
Bump sh from 2.2.2 to 2.2.4 in /recipes/codonfm_ptl_te dependencies Pull requests that update a dependency file python Pull requests that update Python code
#1686 opened Jul 17, 2026 by dependabot Bot Loading…
2
ci(interp): test the shared sae library, not just the recipes
#1685 opened Jul 14, 2026 by polinabinder1 Contributor • Draft
2
Bump transformers from 4.51.3 to 5.5.0 in /models/geneformer dependencies Pull requests that update a dependency file python Pull requests that update Python code
#1684 opened Jul 14, 2026 by dependabot Bot Loading…
2
Bump transformers from 4.56.2 to 5.5.0 in /recipes/codonfm_ptl_te dependencies Pull requests that update a dependency file python Pull requests that update Python code
#1683 opened Jul 13, 2026 by dependabot Bot Loading…
2
feat(recipes): add evo2_megatron_quant — INT8 weight compression + ModelOpt PTQ harness
#1682 opened Jul 12, 2026 by huthvincent • Draft
3 of 5 tasks
28
Bump mistune from 3.1.3 to 3.3.0 in /recipes/codonfm_ptl_te dependencies Pull requests that update a dependency file python Pull requests that update Python code
#1680 opened Jul 10, 2026 by dependabot Bot Loading…
2
Bump soupsieve from 2.7 to 2.8.4 in /recipes/codonfm_ptl_te dependencies Pull requests that update a dependency file python Pull requests that update Python code
#1677 opened Jul 9, 2026 by dependabot Bot Loading…
2
[TEST — DO NOT MERGE] verify #1667 interp GPU lane runs on the #1622 recipe
#1670 opened Jul 1, 2026 by polinabinder1 Contributor • Draft
6
feat(evo2-sae): streaming smoke test (producer/consumer) + Lepton convergence config
#1668 opened Jun 30, 2026 by polinabinder1 Contributor Loading…
18
add mike build instructions
#1666 opened Jun 29, 2026 by pstjohn Collaborator Loading…
1
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