Embedded scripts cleanup

[rfbgo]

Previously we had python files (eg _ramble_cleaner.py) hiding as comments which we then echo to file. This PR promotes them to real files and allows them to be copied instead

This means we can do things like lint and reason about them more easily

[gemini-code-assist]

Code Review

This pull request refactors the workspace utility scripts by moving the inline script strings from cleaner.py and file_editor.py into standalone files under share/ramble/scripts/. The workspace logic now copies these scripts directly using shutil.copyfile, and corresponding tests have been added. Feedback suggests using os.scandir() as a context manager in _ramble_cleaner.py to ensure proper resource cleanup, and defensively checking for None values when loading module specs in _ramble_file_editor.py.

[ramble-pr-bot]

Ramble Performance Test Metrics

Results produced with commit: b2e0446

Test Name	Outcome	Duration (s)	Most Recent Run (s)	Last 5 Avg (s)
test_analyze_large_file	passed	2.1646	2.1057 (279e771)	2.0811
test_large_template_expansion	passed	1.1816	1.1903 (279e771)	1.1715
test_many_experiments	passed	24.5376	23.4966 (279e771)	23.2766
test_many_objects_defaults	passed	13.4906	12.3570 (279e771)	12.2878
test_matrix_filter_perf	passed	1.1719	1.0507 (279e771)	1.0456

[codecov]

Codecov Report

✅ All modified and coverable lines are covered by tests.
✅ Project coverage is 94.05%. Comparing base (96b2062) to head (b2e0446).
⚠️ Report is 7 commits behind head on develop.

Additional details and impacted files

@@           Coverage Diff            @@
##           develop    #1741   +/-   ##
========================================
  Coverage    94.05%   94.05%           
========================================
  Files          369      370    +1     
  Lines        37180    37234   +54     
========================================
+ Hits         34968    35022   +54     
  Misses        2212     2212           

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[linsword13]

Great stuff!

One nit question: are there other checks (like mypy) that should be enabled for these /share/ramble/scripts/** files?

[rfbgo]

Hmm great question. I will push something to enable mypy for those files

[rfbgo]

@dcoapp recheck