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rscript_analysis_documentation

I will use this repository to store many of my ad hoc rscripts I created for quick analysis

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Name		Name	Last commit message	Last commit date
ATAC_fld_over_atac_chromhmm_states.Rmd		ATAC_fld_over_atac_chromhmm_states.Rmd
README.md		README.md
extract_read_start_sites_for_atac_bams.Rmd		extract_read_start_sites_for_atac_bams.Rmd
find_diff_peaks_and_plot.R		find_diff_peaks_and_plot.R
find_max_idr_and_ATACseq.Rmd		find_max_idr_and_ATACseq.Rmd
find_max_idr_pair.Rmd		find_max_idr_pair.Rmd
find_max_idr_pair_with_parallelization_future.Rmd		find_max_idr_pair_with_parallelization_future.Rmd
finding_signal_in_up_down_Peaks_ucsc_tools.Rmd		finding_signal_in_up_down_Peaks_ucsc_tools.Rmd
get_c-score_delta_analysis.Rmd		get_c-score_delta_analysis.Rmd
get_gene_names_from_gene_ids.Rmd		get_gene_names_from_gene_ids.Rmd
getting_proseq_coordinates.Rmd		getting_proseq_coordinates.Rmd
making_venn_diagram_and_redoing_proseq_maplot.Rmd		making_venn_diagram_and_redoing_proseq_maplot.Rmd
overlap_atac_with_genehancer.Rmd		overlap_atac_with_genehancer.Rmd
parse_chromhmm_into_separate_beds.Rmd		parse_chromhmm_into_separate_beds.Rmd
plot_atac_enrichment_of_histones.Rmd		plot_atac_enrichment_of_histones.Rmd
rna_seq_deseq2_test.Rmd		rna_seq_deseq2_test.Rmd
split_peaks_into_high_low_medium.Rmd		split_peaks_into_high_low_medium.Rmd
subsampling_peaks.Rmd		subsampling_peaks.Rmd
subset_atac_peaks_with_histone_marks_then_plot.Rmd		subset_atac_peaks_with_histone_marks_then_plot.Rmd