GitHub - ThorstenRings/Conedy

Branches Tags

Name		Name	Last commit message	Last commit date
Latest commit History 486 Commits
addedNodes		addedNodes
debian		debian
documentation		documentation
testing		testing
Doxyfile		Doxyfile
FlexLexer.h		FlexLexer.h
Jamroot		Jamroot
LICENSE		LICENSE
Makefile		Makefile
Parser.h		Parser.h
Parser.ih		Parser.ih
Parser.yy.declaration		Parser.yy.declaration
Parser.yy.tokens		Parser.yy.tokens
README		README
Scanner.h		Scanner.h
Scanner.ll.begin		Scanner.ll.begin
Scanner.ll.end		Scanner.ll.end
addNewNode.py		addNewNode.py
baseType.h		baseType.h
bisonc++.jam		bisonc++.jam
command.cpp		command.cpp
command.h		command.h
commandLineArguments.cpp		commandLineArguments.cpp
commandLineArguments.h		commandLineArguments.h
conedy.cpp		conedy.cpp
conedy.vim		conedy.vim
config.h.tmpl		config.h.tmpl
configure.sh		configure.sh
containerNode.h		containerNode.h
createNetwork.cpp		createNetwork.cpp
createNetwork.h		createNetwork.h
dynNetwork.cpp		dynNetwork.cpp
dynNetwork.h		dynNetwork.h
dynNode.cpp		dynNode.cpp
dynNode.h		dynNode.h
edge.h		edge.h
eventHandler.cpp		eventHandler.cpp
eventHandler.h		eventHandler.h
expression.h		expression.h
fileList		fileList
flex++.jam		flex++.jam
fullNetwork.cpp		fullNetwork.cpp
fullNetwork.h		fullNetwork.h
globals.cpp		globals.cpp
globals.h		globals.h
gslNoise.cpp		gslNoise.cpp
gslNoise.h		gslNoise.h
gslOdeIntegrator.h		gslOdeIntegrator.h
gslOdeNode.cpp		gslOdeNode.cpp
gslOdeNode.h		gslOdeNode.h
instruction.cpp		instruction.cpp
instruction.h		instruction.h
integrator.h		integrator.h
ioNode.cpp		ioNode.cpp
ioNode.h		ioNode.h
lyapunov.cpp		lyapunov.cpp
lyapunov.h		lyapunov.h
manpage.1		manpage.1
mapNode.cpp		mapNode.cpp
mapNode.h		mapNode.h
network.cpp		network.cpp
network.h		network.h
network.neu		network.neu
networkConstants.h		networkConstants.h
neuroPython.cpp		neuroPython.cpp
neuroPython.h		neuroPython.h
neuronModels.cpp		neuronModels.cpp
neuronModels.h		neuronModels.h
node.cpp		node.cpp
node.h		node.h
nodeImplement.h		nodeImplement.h
ode.h		ode.h
odeNode.cpp		odeNode.cpp
odeNode.h		odeNode.h
params.cpp		params.cpp
params.h		params.h
parserSemantic.h		parserSemantic.h
pco.h		pco.h
pcoDelay.h		pcoDelay.h
priorityQueue.cpp		priorityQueue.cpp
priorityQueue.h		priorityQueue.h
pulseCoupledExcitatoryNeuron.cpp		pulseCoupledExcitatoryNeuron.cpp
pulseCoupledExcitatoryNeuron.h		pulseCoupledExcitatoryNeuron.h
pulseCoupledPhaseOscillator.cpp		pulseCoupledPhaseOscillator.cpp
pulseCoupledPhaseOscillator.h		pulseCoupledPhaseOscillator.h
recompileConedy		recompileConedy
recompilePython-Conedy		recompilePython-Conedy
registerStandards.h		registerStandards.h
sde.h		sde.h
sdeNode.cpp		sdeNode.cpp
sdeNode.h		sdeNode.h
setup.py		setup.py
spatialNetwork.cpp		spatialNetwork.cpp
spatialNetwork.h		spatialNetwork.h
specialNodes.h		specialNodes.h
statisticsNetwork.cpp		statisticsNetwork.cpp
statisticsNetwork.h		statisticsNetwork.h
stdOdeIntegrator.cpp		stdOdeIntegrator.cpp
stdOdeIntegrator.h		stdOdeIntegrator.h
stdSdeIntegrator.cpp		stdSdeIntegrator.cpp

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Conedy is a scientific tool for the numerical integration of dynamical systems, whose mutual couplings are described by a network. Its name is an abbrevation of “Complex Networks with Dynamics”.


see http://www.conedy.org for documentation


Build dependencies on a debian-based system:


sudo aptitude install debhelper  cdbs python-all-dev boost-build  libboost-dev libgsl0-dev libboost-dev libboost-python-dev libboost-iostreams-dev libz-dev python-support bisonc++ flex  texlive-latex-base python-sphinx texlive-latex-recommended texlive-latex-extra texlive-fonts-recommended vim-common dvipng