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  1. SpectralInference.jl SpectralInference.jl Public

    Spectral [phenotype/phylogenetic] Inference package

    Julia 1 1

  2. spipy spipy Public

    Python tools for spectral inference

    Python

  3. Doran_etal_2023 Doran_etal_2023 Public

    Curated code repository, reproducing analyses from "Subspecies phylogeny in the human gut revealed by coevolutionary constraints across the bacterial kingdom"

    Jupyter Notebook

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