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arjunbioinfo/README.md

Mallikarjuna Thippana, PhD

Computational Biologist — Genomics · Epigenomics · Single-Cell & Spatial Multi-Omics · Statistical ML

Postdoctoral researcher at Karolinska Institutet — cancer genomics, chromatin biology, and machine learning. Full bio, publications, and CV on my portfolio.

Method implementations

Peer-reviewed, alignment-free gene-prioritization methods I developed — each with documented code, tests, CI, and an archived Zenodo DOI.

Method Repository Software DOI
Moment of inertia tensor moment-of-inertia-tensor-gene-prioritization DOI
Chaos game + 2D MF-X-DFA cgr-mfxdfa-gene-prioritization DOI
qPCR Efficiency-correction Efficiency-corrected-rt-qpcr

More repositories on the way. 🚧

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  1. arjunbioinfo.github.io arjunbioinfo.github.io Public

    Personal portfolio of Dr. Mallikarjuna Thippana — computational biologist specializing in genomics & epigenomics (bulk RNA-seq, ChIP-seq, ATAC-seq, CUT&RUN), single-cell & spatial multi-omics, and …

    HTML

  2. cgr-mfxdfa-gene-prioritization cgr-mfxdfa-gene-prioritization Public

    Chaos game representation + 2D multifractal cross-correlation (MF-X-DFA) for gene prioritization (Theory in Biosciences 2024, doi:10.1007/s12064-024-00418-3)

    Python

  3. moment-of-inertia-tensor-gene-prioritization moment-of-inertia-tensor-gene-prioritization Public

    Alignment-free gene prioritization using the moment of inertia tensor (Proteins 2022, doi:10.1002/prot.26226)

    Python

  4. efficiency-corrected-rt-qpcr efficiency-corrected-rt-qpcr Public

    Python