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[Bug: 766] Fix OpenFL MICCAI tutorials #1

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[Bug: 766] Fix OpenFL MICCAI tutorials #1

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[Bug: 766] Fix OpenFL MICCAI tutorials
NeethuESim Apr 27, 2023
b132088
fix(bug 766): added python version update
NeethuESim May 23, 2023
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614 changes: 403 additions & 211 deletions tutorial_notebooks/Tutorial_1_Medmnist_2D.ipynb
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21 changes: 19 additions & 2 deletions tutorial_notebooks/Tutorial_3_GaNDLF_OpenFL_tutorial.ipynb
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Original file line number Diff line number Diff line change
Expand Up @@ -8,6 +8,7 @@
"source": [
"# Federated GaNDLF Tutorial with PathMNIST Dataset\n",
"[![Open In Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/intel/fl-tutorial/blob/gh-pages/tutorial_notebooks/Tutorial_3_GaNDLF_OpenFL_tutorial.ipynb)\n",
"### Note: If running the notebook on google colab, please make sure to use python version 3.8, OpenFL works with this version only.\n",
"\n",
"In this tutorial, we will be using the **Generally Nuanced Deep Learning Framework** (GaNDLF) to perform training and inference on a ResNet architecture, with PathMNIST, a dataset of colon pathology images, using [OpenFL](https://github.com/intel/openfl) in a federated learning fashion. This is a multi-class classification task: there are 9 different types of colon tissue displayed in the pathology images, each represented by its own class.\n",
"\n",
Expand All @@ -25,6 +26,22 @@
"Let's get these out of the way first."
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"#If python version != 3.8, then uncomment & run the following code to change the python version to 3.8\n",
"!python --version\n",
"\n",
"#!sudo update-alternatives --install /usr/bin/python3 python3 /usr/bin/python3.8 1\n",
"#!sudo update-alternatives --config python3\n",
"#!python3 --version\n",
"#!sudo apt install python3-pip\n",
"#!python --version"
]
},
{
"cell_type": "code",
"execution_count": 1,
Expand Down Expand Up @@ -2043,7 +2060,7 @@
},
"gpuClass": "standard",
"kernelspec": {
"display_name": "Python 3.8.0 ('venv': venv)",
"display_name": "Python 3 (ipykernel)",
"language": "python",
"name": "python3"
},
Expand All @@ -2057,7 +2074,7 @@
"name": "python",
"nbconvert_exporter": "python",
"pygments_lexer": "ipython3",
"version": "3.8.0"
"version": "3.8.16"
},
"vscode": {
"interpreter": {
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