SSA_tutorial

Example code in a jupyter notebook in how to interact with a statistical shape atlas. The atlas is downloaded from the CAP website. The jupyter notebook has code blocks that demonstrate how to:

• load in and use the atlas
• visualize the variance explained by the principal components
• visualize the mean ed and es shape of the atlas
• plot an interactive plot to see how changing the scores of the different shape modes change the shape
• project a sample patient represented in text files onto the atlas to generate shape mode scores

How to install

1. Clone the github: git clone https://github.com/cmrg-lab/SSA_tutorial.git
2. Open the Juypyter notebook ExploreAtlas_AQ_20250616.ipynb using your tool of choice. I use VS code but of course you can open it through the terminal as well.
3. Run the cells!