Fix annotator and CLI defaults for large data - #1379
Merged
Merged
Conversation
anwai98
force-pushed
the
fix-2d-annotator-defaults
branch
from
September 15, 2026 21:47
d150250 to
21737ce
Compare
anwai98
changed the title
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
1 participant
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
Okay this PR should fix all the things for you! @constantinpape
Can you quickly also get the latest
torch-emfrom source as well (just to be sure), and tell me if this looks okay?Here's my minimal based inspired by yours:
micro_sam annotator segmentation -i ~/data/janowczyk/data/nuclei/10256_500_f00001_original.tif --ndim 2