fix(repo-server-api): stage the whole branch folder for kustomize sources with refs - #474
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Multi-source apps with a kustomize content source stage only the source dir plus
.refs/, so kustomize references escaping the directory (../../base/...) fail withno such file or directory. The no-refs fast path already streams the branch root for kustomize sources; this applies the same rule to the ref-sources path (and skips.gitin directory copies). Trades a per-app tree copy for correctness; only hit by kustomize sources that also have ref sources.Regression test included; validated on a ~1700-app monorepo (6 failing apps → 0).